Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01904 ATGTTCTTGGCTATTACACATCCACTTGGCCCCTCCCCCATGTCACTTGCACCAACCCCAATTATATCTCCATTCCTCCTAAACTTCTCGTTTCTTTCCTCTTCCTCCTCTCTCCATCAACCTTCAATCTCTCTCTCTCTATCTCTATCTCGCGCACGCACACACATTTCTCGCCGGGGAACTCGACAAAACCCCCGGAATCCGCCATGGAAGATGGATAGATTCATCCAGTCGCCGGCGTCCAAATTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCAGCGCGGCGGCCGCTACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGACCCTGATAGCGACATTGTAGCACAATGGAACCGCGTATTCCTAGTGACATGCCTGATCGCTCTTTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCATGCCTGACCTCGGAGGTGAATCTGGGAGTGGCGATCACGTTCTTCAGAACGGTAACCGATCTGTTCTTCTTGTTGCACATGGTGTTGAAGTTTCGAACGGCATATGTTGCTCCAAGCTCTAGGGTTTTTGGAAGAGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAATAACAAGAAACTCAAGAGTGGATCATGCCAACAACACAATCGCTCTCCTTGTTCTTCTTCAATACGTTCCACGGTTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACAACTGGTGTTGTTGCCAAAACTGCATGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGACAGTTTTCATGTTGGAAATCAGAATGTGCAAAGGAAAATGCCTCCCAAGTTCTAACATGCCTTCCCATCTTCTTGGACTGTACCAGTTTGAATGACACTTTAAGACAATATTGGCTTAATGTCACTCAAGTTACTTCCAAATGTGATCCAAGGAACGAAAACATTAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATATGGCCAAACTTTGGATACAACAACTTACATTGGGGAGACATTATTTTGCATATCAACATGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCCATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGAGACACTGAAGAATGGATGAGACGTCGTCAGTTACCACCAGATTTGCAAGAACGAGTTCGCCGATTCGTTCAATATAAATGGCTGGCCACGAGAGGGGTTAATGAAGAATCCATTTTACGTTCACTACCTATCGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTCTCGTCTCATCCTTGTGTACTCAAGGAACGTACATTGTGCGAGAAGATGATCCAGTTAATGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCAACGACCAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCTAGTTTGAACATGCCTTCTTCTACTCGAACCGTCAGAGCACTTACCGAAGTTGAAGCGTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCCGGACAATTCAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGAACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAACAGCATACAGAGACAGCTTGAGTTCCTATGCAGATTCAATGCAACAAGATAACGAATACGATATCGAGCTAGCAGAAGAAAATTACGACGATGACAGTGACAACACCATTGAAGATGAAGACGACATGTCTTCTGCAGACTACATGAACAAAACACAACATCTAGGGGCAACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGGTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2364 44.33 MFLAITHPLGPSPMSLAPTPIISPFLLNFSFLSSSSSLHQPSISLSLSLSRARTHISRRGTRQNPRNPPWKMDRFIQSPASKFRPFRRQLIGSSSDSATSAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVAITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPITRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASQVLTCLPIFLDCTSLNDTLRQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSTAYRDSLSSYADSMQQDNEYDIELAEENYDDDSDNTIEDEDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKGQTSKPSSLKMPKLFKPDEPDFSMDG 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26747348 26751438 - MELO3C009944.2.1 Cme04g01904 326165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01904 787 MobiDBLite consensus disorder prediction 773 787 - -
Cme04g01904 787 Pfam Ion transport protein 129 454 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme04g01904 787 Gene3D Helix hairpin bin 454 518 - -
Cme04g01904 787 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 107 785 - -
Cme04g01904 787 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 107 785 - -
Cme04g01904 787 CDD CAP_ED 527 658 IPR000595 -
Cme04g01904 787 ProSiteProfiles cAMP/cGMP binding motif profile. 527 657 IPR000595 -
Cme04g01904 787 SUPERFAMILY Voltage-gated potassium channels 120 449 - -
Cme04g01904 787 Gene3D Jelly Rolls 525 645 IPR014710 -
Cme04g01904 787 MobiDBLite consensus disorder prediction 754 770 - -
Cme04g01904 787 Pfam Cyclic nucleotide-binding domain 550 637 IPR000595 -
Cme04g01904 787 MobiDBLite consensus disorder prediction 754 787 - -
Cme04g01904 787 SUPERFAMILY cAMP-binding domain-like 457 652 IPR018490 -
Cme04g01904 787 Gene3D - 132 452 - -
Cme04g01904 787 SMART cnmp_10 527 658 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01904 Cme-Chr4:26747348 Cme05g01491 Cme-Chr5:24333092 0 dispersed
Cme02g01001 Cme-Chr2:14966992 Cme04g01904 Cme-Chr4:26747348 0 transposed
Cme04g00327 Cme-Chr4:2616233 Cme04g01904 Cme-Chr4:26747348 0 transposed
Cme06g02074 Cme-Chr6:26030983 Cme04g01904 Cme-Chr4:26747348 1.16E-117 transposed
Cme08g02307 Cme-Chr8:30063052 Cme04g01904 Cme-Chr4:26747348 0 transposed
Cme11g01806 Cme-Chr11:26249176 Cme04g01904 Cme-Chr4:26747348 0 transposed
Cme02g01958 Cme-Chr2:25852405 Cme04g01904 Cme-Chr4:26747348 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01904 K05391 - csv:101216651 1445.25