Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01926 ATGGCCGCCGCCGGAGGAACAGAGGCTTTCCCCGATCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAACTCGATTTCCTCCCCTTCACCTGCGACGGTTGCCAAAAGGTTTTCTGTTCGGAACATCGCGGTTTCAAATCCCACGACTGCCCTGAATCCGATCGGAACAGCAGAAAAGTTGTGGTCTGCGAAATCTGCTCGACGTCGATCGAGACCACTGGGAAGGACGGCGGCGACGAGACCAAGATTCTGGAGAGGCATCACGAATCGGGAGATTGCGATCCAAGCAAGAAGAAGAAGCCCACGTGTGCGGTGAAGCGGTGCCGGGAAATTCTTACGTTTTCGAATACTTGTGTGTGCAAAACCTGCCGGCTGAAAGTGTGTTTGAAGCACCGGTTTCCGGCGGAGCATGGTTGTGGACGTCCGTCGTCAACGGCAGGGGCGGTGGCAGATAAAGGACGGTGGAATGAGAAGTTTATGGCGGCTTTGGGGTTGAGGAGCGGCGAGGATTGTGGGAAGAGGGAACGGCCAAGGACGGGGGCGAAGGGATCTTCTCCGACCGCCCCATCCGTTAAAGCTTGTTGA 588 57.14 MAAAGGTEAFPDLGRHCQHSDCHQLDFLPFTCDGCQKVFCSEHRGFKSHDCPESDRNSRKVVVCEICSTSIETTGKDGGDETKILERHHESGDCDPSKKKKPTCAVKRCREILTFSNTCVCKTCRLKVCLKHRFPAEHGCGRPSSTAGAVADKGRWNEKFMAALGLRSGEDCGKRERPRTGAKGSSPTAPSVKAC 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26983043 26984149 + MELO3C009923.2.1 Cme04g01926 326187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01926 195 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 7 190 - -
Cme04g01926 195 Pfam AN1-like Zinc finger 104 142 IPR000058 GO:0008270
Cme04g01926 195 Pfam AN1-like Zinc finger 17 54 IPR000058 GO:0008270
Cme04g01926 195 SMART AN1_Zf_4 104 145 IPR000058 GO:0008270
Cme04g01926 195 SMART AN1_Zf_4 17 56 IPR000058 GO:0008270
Cme04g01926 195 SUPERFAMILY AN1-like Zinc finger 64 148 IPR035896 -
Cme04g01926 195 ProSiteProfiles Zinc finger AN1-type profile. 11 59 IPR000058 GO:0008270
Cme04g01926 195 ProSiteProfiles Zinc finger AN1-type profile. 98 148 IPR000058 GO:0008270
Cme04g01926 195 Gene3D - 80 158 IPR035896 -
Cme04g01926 195 Gene3D - 2 70 IPR035896 -
Cme04g01926 195 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 7 190 - -
Cme04g01926 195 MobiDBLite consensus disorder prediction 169 195 - -
Cme04g01926 195 SUPERFAMILY AN1-like Zinc finger 10 55 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01926 Cme-Chr4:26983043 Cme08g01616 Cme-Chr8:16670255 7.08E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01926 - - csv:101220304 400.593