Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01939 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATCGGTGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCGAATTTGTCAGTGCCCTCGGGAACAAGCAAAATGAAGAAATGCCGATTCAATCTAGAAGGTCTCCCATTGCCATTCATCAGCCGTTCGAAGCCACAAAACGCGTCGAAATCTTTCCGAATGGGAGTTCAAAGAAGCTCCGACGGAATCAAAACCCTAGGTCGATCACTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATCTAAAAGTGTCGGAACAGAAAATCTTCGATCCACAGGACAAATCGCTCCTCTTCTGGAACAAACTATTCGTGTTGTGCTGTATCCTCGCCGTCTCTGTTGATCCGTTGTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCTATCGATGTTTTCTACTTGATTCGGATGGGGTTTCAGTTCCGAACGGCTTACATTGCGCCGTCGTCTAGGGTGTTTGGTCGGGGCGAGCTTGTGATTGATCCGACGGAGATCGCCCAGCGGTATCTTCAGCGCTACTTTATTGCTGATTTTCTATCTGTTCTTCCTCTTCCTCAGTTAGTGGTGTGGAGATTTCTTCACAGATCAAAAGGATCAGAAGTTTTGGCAACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCAAGATTTATTAGATTTATACCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTATACATGCTTGCCAGTCATATAGCAGGAGCATTCTGGTACTTGCTTGCAGTGGAGAGGAACGATGCATGTTGGCGGCAAGCATGCAGAAGCAGTGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGGCTGGGTATAAAGATTGGAGAAATATAAGCGTTGAAGTTCTCACCAAGAAATGCACTGCCTTGGGAGATAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCTGGCATTGTTCAATCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCCTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAAGGGCTGCTCACTAGTACTTATCCTGGGGAGGTTATCTTTTCTATCCTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAGACGTATCTTCAATCTCTAACAGTCCGACTTGAAGAGATGCGCATCAAGAGGAGAGACTCTGAGCAATGGATGCACCATCGACTGCTTCCGCCAGACTTGAGAGAAAAGGTTAGGCGCTACGATCAGTACAAATGGCTTGAAACTAGAGGTGTTGATGAAGAGAGCTTGGTTCAGAGTCTGCCTAAAGATCTTAGGAGAGACATCAAACGACATCTCTGTCTCAATTTGGTTAGAAGGCATATCTTAGTGGATCTATGTGCTTTGAGTGGTCAAATTATTGCTGGGTTGGCTTTATTCACACAGGTCCCATTATTTGCAAACATGGACGAACGTCTCCTAGACGCAATATGCGAGAGGCTAAAACCAACATTATACACTGAGAACACATACATAGTACGAGAAGGCGACCCAGTTGACGAAATGCTCTTCATAATCCGCGGCCGTCTAGAGAGCGTCACCACCGACGGTGGCCGTAGCGGCTTCTACAACCGCGGCATATTAAAAGAAGGCGATTTCTGTGGTGAAGAGCTTTTAACCTGGGCTCTCGATCCCAAATCCGGCTCCAACCTCCCTTCCTCCACTCGCACCGTCCATGCTCTAACCGAGGTCGAAGCCTTCGCCTTAGAGGCCGAGGAACTCAAATTCGTAGCCAGCCAGTTCCGTCGCCTCCACAGTCGTCAAGTTCAACACACCTTCAGATTCTACTCCCAGCAGTGGCGAACTTGGGCGTCGTGTTTCATACAGGCAGCGTGGCGGCGGTATTTAAAACGGAAAATCGCGGAGCTGCGACGGAAGGAAGAGGAGGAAGAGGATGCGGCGGCGGTTTCGGCGGCGTATAGTACGACGAGACTTGGGGCCACGATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGACATCGAATGAGAAATGTGAGTGGGAAGAGCTTGATTAGCTTGCAGAAGCCGGCGGAACCTGATTTTTCTGTTTATAAAGGAGATTAA 2274 47.58 MFDCGGYKSQYIGGHKEKFVRLDDLDSNLSVPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRMGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMGFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFIADFLSVLPLPQLVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNKHMAGYKDWRNISVEVLTKKCTALGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRHILVDLCALSGQIIAGLALFTQVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGILKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAVSAAYSTTRLGATILASRFAANALRGHRMRNVSGKSLISLQKPAEPDFSVYKGD 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27061927 27065940 + MELO3C009910.2.1 Cme04g01939 326200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01939 757 Pfam Ion transport protein 113 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme04g01939 757 Gene3D - 116 436 - -
Cme04g01939 757 SMART cnmp_10 533 664 IPR000595 -
Cme04g01939 757 Coils Coil 681 701 - -
Cme04g01939 757 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 525 754 - -
Cme04g01939 757 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 13 511 - -
Cme04g01939 757 SUPERFAMILY cAMP-binding domain-like 441 653 IPR018490 -
Cme04g01939 757 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 525 754 - -
Cme04g01939 757 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 511 - -
Cme04g01939 757 ProSiteProfiles cAMP/cGMP binding motif profile. 533 663 IPR000595 -
Cme04g01939 757 SUPERFAMILY Voltage-gated potassium channels 106 433 - -
Cme04g01939 757 Pfam Cyclic nucleotide-binding domain 554 643 IPR000595 -
Cme04g01939 757 CDD CAP_ED 533 664 IPR000595 -
Cme04g01939 757 ProSiteProfiles IQ motif profile. 669 698 IPR000048 GO:0005515
Cme04g01939 757 Gene3D Jelly Rolls 531 651 IPR014710 -
Cme04g01939 757 Gene3D Helix hairpin bin 438 502 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01939 Cme-Chr4:27061927 Cme05g01491 Cme-Chr5:24333092 0 dispersed
Cme04g01939 Cme-Chr4:27061927 Cme09g01973 Cme-Chr9:23623350 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01939 K05391 - csv:101221166 1362.82