Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01960 ATGGTGGCAGGTTGTAAAATTAAGCTTTTGATGGTTTTGGTTTCAATGGCTGTTCTTATGCCAACTCTTAGAGCTGGTATTGCTGAATTTGATGACTATTTGCTCCAAAAGGCTGAAGAAGCTAAACAAGCTTCTCTTGAAGCTTTCCACCCTGACCCCATGAATGTCACTGACCATTTCAATCAACATGTTCATCTAGCTTTGGAGGGGATAGAGGGAAGCAATAGTACTAGGAGGAGCCTAGCGAAATACAAAGGGCCCTGCTTGGCTACAAATCCAATTGATCGTTGCTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCAAGTGTGTGCTTGGTTTCGGCAGAAAGACCACTGGTGGCAAAAAAGGACGTATCTACGTCGTGACTGATCCATCAGACAACGATGTTGTTAATCCTAAGCCTGGAACCCTTCGATATGGCGCTCTTCAGAAGCGACCACTATGGATCATTTTTGCGCGTAGCATGATCATTAGGCTGTCCAAGGAGCTTATGGTGACTAGCCACAAGACAATTGATGCTCGTGGTTCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTCGCTCGGAATGTAATCATCCATGGCCTTCGCATCCACCATGTCATCTCGACTGGTGGTGGCATGATCCGAGACACTGCCAACCATGTCGGTCTTAGAACAGTTAGTGATGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAATTGCCAAGATGGACTTATCGACGCAATCCAAGGCTCTACTGCCATCACCATCTCCAACTCTCATTTCACTCATCACAATGATGTGATGCTGTTTGGTGCAAGTGATTCATATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTTGGAAAGGGATTAGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTCGTCAACAATGATTACACTCACTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATTGCCCCACCCAACCCTGCTGCAAGACAGATTACAAATAGAAACTATGCACCAGAGAGTGTATGGAAAACATGGACATGGAGATCGGAAGGAGATTTGATGATGAATGGAGCATATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGACCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACTTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTTTGTTGGTCGCCCATGCTAA 1326 46.0 MVAGCKIKLLMVLVSMAVLMPTLRAGIAEFDDYLLQKAEEAKQASLEAFHPDPMNVTDHFNQHVHLALEGIEGSNSTRRSLAKYKGPCLATNPIDRCWRCDPNWAKNRKKLAKCVLGFGRKTTGGKKGRIYVVTDPSDNDVVNPKPGTLRYGALQKRPLWIIFARSMIIRLSKELMVTSHKTIDARGSNVHIAYGAGLSIQFARNVIIHGLRIHHVISTGGGMIRDTANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCFVGRPC 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27216012 27218296 + MELO3C009891.2.1 Cme04g01960 326221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01960 441 SUPERFAMILY Pectin lyase-like 92 431 IPR011050 -
Cme04g01960 441 Pfam Pectate lyase 176 357 IPR002022 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Cme04g01960 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Cme04g01960 441 Gene3D - 91 434 IPR012334 -
Cme04g01960 441 SMART amb_all 166 363 IPR002022 -
Cme04g01960 441 PANTHER PECTATE LYASE 7 441 - -
Cme04g01960 441 PANTHER PECTATE LYASE 18-RELATED 7 441 IPR045032 GO:0030570
Cme04g01960 441 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01301 Cme-Chr3:22538065 Cme04g01960 Cme-Chr4:27216012 0 dispersed
Cme04g01960 Cme-Chr4:27216012 Cme06g00410 Cme-Chr6:2629054 2.05E-165 dispersed
Cme10g00443 Cme-Chr10:2815338 Cme04g01960 Cme-Chr4:27216012 0 wgd
Cme12g01753 Cme-Chr12:24206297 Cme04g01960 Cme-Chr4:27216012 6.49E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01960 K01728 - csv:101202789 875.544