Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01962 ATGGAGGCGGCAGCTTTGGTACTGAAGAACGAGGATAATCTGAGAATATGTTGGAGAGAAGAAGAAGCTCAAACTCAGCCCATAAGACGTGTTAAGCGACGTCGGAGAGACCCGGCTGCCGCCGCCGATCAAACTAATAAGCAGCAGTCTCCGAAACAACACTCCGATCAAGCTCCCACCACCACTATGAAGCGAAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGACGATTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAGAAGAAGAAGGGCAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTTAAGTACTGGGGTGTAACAACCATCACTAATTTCCCTATATCAGAGTATGAGAAAGAGATCGAGATAATGCAAACAATGACAAAGGAGGAGTATTTAGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGCACTCAAGAAGAAGCTGCTCGAGCTTATGACATGGCTGCCATAGAATACCGAGGGATCAATGCAGTCACCAACTTTGACTGGAGCAATTACATGGCCTGGCTGAAGCCTCCTCCGCCGCCATCCACCGTCCCTAACGAAGCCCATTTCCCGTCAGACCCTCATAAGGAACTCTGTAACTCCAGCTCCATCCCAGCTGATGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTCGAGAGCTGCAACACCCCACTCAATGCTTATGCCAGATCCTCTTCTGCATCCGCACTTGACCTTCTTCTTCGATCATCATTTTTCAAGAAACTGGTTGAGACCAACTCGAATCTCTCCGTGGATGAAGCTGATAATGGAGATGAAGCGAAGACTCGAGTGCAGCTCGACAGTGTATTTGACGAGTTTGAAGATGTCTTCTGTGATAGACTTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAAAGTGAGCTTCATTCATACTTCAATGGCACGTTTCATCGTTTCAAAGCAGCCTGA 1071 46.03 MEAAALVLKNEDNLRICWREEEAQTQPIRRVKRRRRDPAAAADQTNKQQSPKQHSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSTVPNEAHFPSDPHKELCNSSSIPADETSLFKNHHYDIDSFHSLQKQELLESCNTPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGDEAKTRVQLDSVFDEFEDVFCDRLTDVPLVCSSNKELQESELHSYFNGTFHRFKAA 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27233307 27236300 + MELO3C009889.2.1 Cme04g01962 326223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01962 356 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700|GO:0006355
Cme04g01962 356 Gene3D AP2/ERF domain 135 191 IPR036955 GO:0003700|GO:0006355
Cme04g01962 356 MobiDBLite consensus disorder prediction 25 71 - -
Cme04g01962 356 Pfam AP2 domain 67 123 IPR001471 GO:0003700|GO:0006355
Cme04g01962 356 SUPERFAMILY DNA-binding domain 164 192 IPR016177 GO:0003677
Cme04g01962 356 CDD AP2 67 133 IPR001471 GO:0003700|GO:0006355
Cme04g01962 356 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Cme04g01962 356 PRINTS Ethylene responsive element binding protein signature 172 192 IPR001471 GO:0003700|GO:0006355
Cme04g01962 356 MobiDBLite consensus disorder prediction 42 67 - -
Cme04g01962 356 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 164 - -
Cme04g01962 356 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 164 341 - -
Cme04g01962 356 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677
Cme04g01962 356 SMART rav1_2 155 196 IPR001471 GO:0003700|GO:0006355
Cme04g01962 356 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
Cme04g01962 356 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Cme04g01962 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 164 - -
Cme04g01962 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 164 341 - -
Cme04g01962 356 ProSiteProfiles AP2/ERF domain profile. 120 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01962 Cme-Chr4:27233307 Cme05g01005 Cme-Chr5:14308733 2.80E-07 dispersed
Cme04g01962 Cme-Chr4:27233307 Cme07g00259 Cme-Chr7:1695945 1.91E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41223 PF00847 AP2 2.20E-09 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01962 - - csv:101210782 659.448