Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01977 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCCCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACTCCGAAACACCCATCAAAATCCAACCCACCACCAAATCTCTCCCCTTCACCAACGGCGTCCTCAAGCGCCACCACCACATCGCGCCGCCGCCTCCTCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTAGGCGGCCACGCTCTAGACGGCTGCGGAGAGTTCATGCCATCCCCAACCGCCACCGCCACGGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCACCGGAATTTCCACCGTCGTGAACCGGATGACCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCACATCACCGTCACCACCCTCCGCCTCCGCCTACGGCGGCGGCGGCTCACCGGAGTCCGAGTTCCGCATCTCCTCCGCCGATCTCCTCCTCGTACTACCCTTCCGCACCCCACATGCTTCTAGCCCTCTCCGGTGTGCTGCCGGAGAACGCTGGGAGCGGCGGTGGATTCCACCACTCGATTATGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAGAATGTACGAATTTGCGGAGAAAGTAGGATGGAAGATTCAGAAGCGAGACGAGGATATGATTCAAGAATTCTGCAGCGACGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAAAACACCCTCGGGAAAAAAGACGGCAGCCGGAATATGAACGGTAGCGGTGGCGAAGGAGACGGCGACGATAAAATTAACGGCGGTGGCGAACCACACGCCACCGCAAATGGGTCGTCTTCATCCTCTTGA 897 56.52 MDLTPAISTAAPTISTGGGAVKSPELDSETPIKIQPTTKSLPFTNGVLKRHHHIAPPPPQVVYKECLKNHAASLGGHALDGCGEFMPSPTATATDPTSLKCAACGCHRNFHRREPDDPIATPTTTHVIEYQPHHRHHPPPPPTAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGVLPENAGSGGGFHHSIMTPSPNSRKRFRTKFTQNQKERMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGSRNMNGSGGEGDGDDKINGGGEPHATANGSSSSS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27378003 27379954 - MELO3C009873.2.1 Cme04g01977 326238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01977 298 MobiDBLite consensus disorder prediction 131 161 - -
Cme04g01977 298 MobiDBLite consensus disorder prediction 1 40 - -
Cme04g01977 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 270 - -
Cme04g01977 298 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 270 - -
Cme04g01977 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Cme04g01977 298 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cme04g01977 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cme04g01977 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cme04g01977 298 SUPERFAMILY Homeodomain-like 191 261 IPR009057 -
Cme04g01977 298 MobiDBLite consensus disorder prediction 256 298 - -
Cme04g01977 298 Gene3D - 190 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01977 Cme-Chr4:27378003 Cme10g01673 Cme-Chr10:22954692 4.06E-55 dispersed
Cme12g01805 Cme-Chr12:24517627 Cme04g01977 Cme-Chr4:27378003 1.67E-42 transposed
Cme10g00417 Cme-Chr10:2641879 Cme04g01977 Cme-Chr4:27378003 1.47E-54 wgd
Cme02g01887 Cme-Chr2:25388319 Cme04g01977 Cme-Chr4:27378003 6.09E-19 wgd
Cme04g01977 Cme-Chr4:27378003 Cme09g00278 Cme-Chr9:2138970 1.63E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41225 PF04770 ZF-HD_dimer 1.90E-29 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01977 - - csv:101204974 534.643