Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01977 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCCCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACTCCGAAACACCCATCAAAATCCAACCCACCACCAAATCTCTCCCCTTCACCAACGGCGTCCTCAAGCGCCACCACCACATCGCGCCGCCGCCTCCTCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTAGGCGGCCACGCTCTAGACGGCTGCGGAGAGTTCATGCCATCCCCAACCGCCACCGCCACGGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCACCGGAATTTCCACCGTCGTGAACCGGATGACCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCACATCACCGTCACCACCCTCCGCCTCCGCCTACGGCGGCGGCGGCTCACCGGAGTCCGAGTTCCGCATCTCCTCCGCCGATCTCCTCCTCGTACTACCCTTCCGCACCCCACATGCTTCTAGCCCTCTCCGGTGTGCTGCCGGAGAACGCTGGGAGCGGCGGTGGATTCCACCACTCGATTATGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAGAATGTACGAATTTGCGGAGAAAGTAGGATGGAAGATTCAGAAGCGAGACGAGGATATGATTCAAGAATTCTGCAGCGACGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAAAACACCCTCGGGAAAAAAGACGGCAGCCGGAATATGAACGGTAGCGGTGGCGAAGGAGACGGCGACGATAAAATTAACGGCGGTGGCGAACCACACGCCACCGCAAATGGGTCGTCTTCATCCTCTTGA 897 56.52 MDLTPAISTAAPTISTGGGAVKSPELDSETPIKIQPTTKSLPFTNGVLKRHHHIAPPPPQVVYKECLKNHAASLGGHALDGCGEFMPSPTATATDPTSLKCAACGCHRNFHRREPDDPIATPTTTHVIEYQPHHRHHPPPPPTAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGVLPENAGSGGGFHHSIMTPSPNSRKRFRTKFTQNQKERMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGSRNMNGSGGEGDGDDKINGGGEPHATANGSSSSS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27378003 27379954 - MELO3C009873.2.1 Cme04g01977 326238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01977 298 MobiDBLite consensus disorder prediction 131 161 - -
Cme04g01977 298 MobiDBLite consensus disorder prediction 1 40 - -
Cme04g01977 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 270 - -
Cme04g01977 298 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 270 - -
Cme04g01977 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Cme04g01977 298 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cme04g01977 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cme04g01977 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cme04g01977 298 SUPERFAMILY Homeodomain-like 191 261 IPR009057 -
Cme04g01977 298 MobiDBLite consensus disorder prediction 256 298 - -
Cme04g01977 298 Gene3D - 190 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01977 - - - csv:101204974 534.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01977 Cme-Chr4:27378003 Cme10g01673 Cme-Chr10:22954692 4.06E-55 dispersed
Cme12g01805 Cme-Chr12:24517627 Cme04g01977 Cme-Chr4:27378003 1.67E-42 transposed
Cme10g00417 Cme-Chr10:2641879 Cme04g01977 Cme-Chr4:27378003 1.47E-54 wgd
Cme02g01887 Cme-Chr2:25388319 Cme04g01977 Cme-Chr4:27378003 6.09E-19 wgd
Cme04g01977 Cme-Chr4:27378003 Cme09g00278 Cme-Chr9:2138970 1.63E-89 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41225 PF04770 ZF-HD_dimer 1.90E-29 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01977 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0