Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01979 ATGGCGAGACGCAACGACAATGAAGAAGCCTTTATTGCCTTGGGAAACGAATGCTCTGATCCTCAACCATCCTTGTTCCGCGACCGATTTGATGAAGTTTACCCACCCGGGTTCTCACGAAAGCTTGTGGCGGAGGTGATTGCTACGTATTTGCTTGTGTTTGTGTCGTGTGGTGTGGCGGCATTGAGTGGGAGTGATGAACAGGAAGTGTCGAAGCTTGGAGCTTCAATTACCTGTGGATTGATTGTCACGGTGATGATTTACGCCGTCGGACATATCTCCGGCGCTCATATGAATCCAGCGGTTACTATTGCTTTTGCTGCCGTTCGGCGATTTCCATGGAAACAGGTTCCACTTTACGCAGCAGCTCAACTAAGTGGAGCTACATCGGCAGCCTTTACACTACGCATATTATTGGATCCAATTCAAGATTTAGGTACAACTTCACCACATGGACCGGCTTTGAAGGCACTTGTTATGGAGATCGTTGTCTCATTTTGTATGATGTTTGTCACTTCGGCGGTTGCCACTGACACGAAAGCTATAGGAGAGCTCGGAGGCATAGCTGTGGGGTCGGCTGTATGTATCTCCTCCATCTTTGCTGGGCCAATATCGGGTGGATCAATGAACCCAGCAAGATCAATAGGACCAGCCATTGCAAGTTCACGTTACGAAGGAATTTGGGTGTATATGATCGGTCCAATTACAGGAACTTTGCTTGCGGCATTTTCATATAATTTCATACGAGCCACTGAAAAACACACCCATTCACTCTCGTCACATTGA 786 47.46 MARRNDNEEAFIALGNECSDPQPSLFRDRFDEVYPPGFSRKLVAEVIATYLLVFVSCGVAALSGSDEQEVSKLGASITCGLIVTVMIYAVGHISGAHMNPAVTIAFAAVRRFPWKQVPLYAAAQLSGATSAAFTLRILLDPIQDLGTTSPHGPALKALVMEIVVSFCMMFVTSAVATDTKAIGELGGIAVGSAVCISSIFAGPISGGSMNPARSIGPAIASSRYEGIWVYMIGPITGTLLAAFSYNFIRATEKHTHSLSSH 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27419251 27422924 - MELO3C009871.2.1 Cme04g01979 326240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01979 261 Gene3D Glycerol uptake facilitator protein. 20 260 IPR023271 -
Cme04g01979 261 CDD MIP 40 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g01979 261 SUPERFAMILY Aquaporin-like 32 255 IPR023271 -
Cme04g01979 261 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cme04g01979 261 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 29 260 - -
Cme04g01979 261 PANTHER AQUAPORIN NIP2-1 29 260 IPR034294 -
Cme04g01979 261 Pfam Major intrinsic protein 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g01979 261 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g01979 261 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g01979 261 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g01979 261 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g01979 261 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g01979 261 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01979 Cme-Chr4:27419251 Cme08g00198 Cme-Chr8:1344229 4.69E-75 dispersed
Cme04g01979 Cme-Chr4:27419251 Cme04g01980 Cme-Chr4:27451553 1.10E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01979 K09874 - csv:101205456 486.493