Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01994 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGGAAGACGATTCCTCTACCGGAGCCTTCTCCGGCCACTCCTCACCTTCCCTCTTCTTCTTTACCTATTCCCACACCCGCTGACCATACCACTGCCGTTGCTAATCATGACCACGATTCTTCTTCTTCAACCTTGTCTCCGGAAGCTAATATCGATGTCGATGGTGAAGATCTGGAAGTCGATAAGGATGCTATAAGCGAGAAATCAGGTGGAACTAAGCTGGAAGATAGAGATGGAGATGGAGATGGAGATGGAGGGTTGTCTGTTTCGACTGAAGAGTTCACGAATTCAGATACTTCTGTAGTGAAAACAGAGAATTCTAAAGTACTTTCCGGCGAGGAAAGTAATCCATCCAGTACTACAAAGACTGATGAACAGAACGAAACAAGTAATTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCATGCCCTCGCTGTAATAGTATGGATACCAAGTTCTGCTACTATAATAATTACAATGTTAATCAACCACGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGGGGGACAATGAGGAACGTTCCTGTGGGTGCAGGACGTCGTAAGAACAAAAGCTCCGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCAGCATGCTCGAACTGATGTTCCTAATGGTATTCATCATTCTACCCTCAAACCTAATGGAAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTAAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAATCTCAGGAATCTGCTCCAACTCCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTTATTCATAATTGTCAAGGCTTTTTACCTCCTCACGTTCCATTCTTTCCTGGGACTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCGCCTCCTACTTTCTATCCACCTGGCATTCCTATGCCGTTCTATCCGACCGCCCCATTTTGGGGTTGTACGGTTCCTGGCGCCTGGCCCATTCCTTGGGTTTCCCAGCCGCCACCTCTAAGCCCTGTTGCCCAAAATCACGCTCCCAACTCTCCAACGTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGTGATTTTGGGGAACACGAGCAGCAGAAAGATAACAAAACTGAGAAATGTCTTTGGATACCGAAAACATTGAGGATAGATGACCCTGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTAGGAATCAAGAATGACAAGACTGATTCAGTTAGTGAAGGGCTCTTCAAGGCTTTTCAATCAAAAAAGATTGACGAAAAGAATCACAAAACCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCACGAAAGCTCGTGA 1545 44.66 MSEPKDPAIKLFGKTIPLPEPSPATPHLPSSSLPIPTPADHTTAVANHDHDSSSSTLSPEANIDVDGEDLEVDKDAISEKSGGTKLEDRDGDGDGDGGLSVSTEEFTNSDTSVVKTENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSEALQHARTDVPNGIHHSTLKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAPTPFINNEEGKTGPQDQVIHNCQGFLPPHVPFFPGTPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWPIPWVSQPPPLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEHEQQKDNKTEKCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKIDEKNHKTEASPVLQVNPAALSRSIKFHESS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27555012 27557633 - MELO3C009859.2.1 Cme04g01994 326255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01994 514 Pfam Dof domain, zinc finger 153 210 IPR003851 GO:0003677|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 412 434 - -
Cme04g01994 514 ProSiteProfiles Zinc finger Dof-type profile. 156 210 IPR003851 GO:0003677|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 293 318 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 140 154 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 1 156 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 73 95 - -
Cme04g01994 514 ProSitePatterns Zinc finger Dof-type signature. 158 194 IPR003851 GO:0003677|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 19 33 - -
Cme04g01994 514 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 513 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 101 139 - -
Cme04g01994 514 PANTHER CYCLIC DOF FACTOR 2 1 513 IPR045174 GO:0003700|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 394 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01994 Cme-Chr4:27555012 Cme12g01987 Cme-Chr12:25615555 4.30E-103 dispersed
Cme04g02074 Cme-Chr4:28135944 Cme04g01994 Cme-Chr4:27555012 1.46E-71 transposed
Cme10g00408 Cme-Chr10:2599811 Cme04g01994 Cme-Chr4:27555012 3.60E-93 wgd
Cme02g01879 Cme-Chr2:25356039 Cme04g01994 Cme-Chr4:27555012 9.09E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41226 PF02701 zf-Dof 2.20E-32 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01994 - - cmo:103486992 1051.2