Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g01994 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGGAAGACGATTCCTCTACCGGAGCCTTCTCCGGCCACTCCTCACCTTCCCTCTTCTTCTTTACCTATTCCCACACCCGCTGACCATACCACTGCCGTTGCTAATCATGACCACGATTCTTCTTCTTCAACCTTGTCTCCGGAAGCTAATATCGATGTCGATGGTGAAGATCTGGAAGTCGATAAGGATGCTATAAGCGAGAAATCAGGTGGAACTAAGCTGGAAGATAGAGATGGAGATGGAGATGGAGATGGAGGGTTGTCTGTTTCGACTGAAGAGTTCACGAATTCAGATACTTCTGTAGTGAAAACAGAGAATTCTAAAGTACTTTCCGGCGAGGAAAGTAATCCATCCAGTACTACAAAGACTGATGAACAGAACGAAACAAGTAATTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCATGCCCTCGCTGTAATAGTATGGATACCAAGTTCTGCTACTATAATAATTACAATGTTAATCAACCACGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGGGGGACAATGAGGAACGTTCCTGTGGGTGCAGGACGTCGTAAGAACAAAAGCTCCGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCAGCATGCTCGAACTGATGTTCCTAATGGTATTCATCATTCTACCCTCAAACCTAATGGAAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTAAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAATCTCAGGAATCTGCTCCAACTCCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTTATTCATAATTGTCAAGGCTTTTTACCTCCTCACGTTCCATTCTTTCCTGGGACTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCGCCTCCTACTTTCTATCCACCTGGCATTCCTATGCCGTTCTATCCGACCGCCCCATTTTGGGGTTGTACGGTTCCTGGCGCCTGGCCCATTCCTTGGGTTTCCCAGCCGCCACCTCTAAGCCCTGTTGCCCAAAATCACGCTCCCAACTCTCCAACGTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGTGATTTTGGGGAACACGAGCAGCAGAAAGATAACAAAACTGAGAAATGTCTTTGGATACCGAAAACATTGAGGATAGATGACCCTGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTAGGAATCAAGAATGACAAGACTGATTCAGTTAGTGAAGGGCTCTTCAAGGCTTTTCAATCAAAAAAGATTGACGAAAAGAATCACAAAACCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCACGAAAGCTCGTGA 1545 44.66 MSEPKDPAIKLFGKTIPLPEPSPATPHLPSSSLPIPTPADHTTAVANHDHDSSSSTLSPEANIDVDGEDLEVDKDAISEKSGGTKLEDRDGDGDGDGGLSVSTEEFTNSDTSVVKTENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSEALQHARTDVPNGIHHSTLKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAPTPFINNEEGKTGPQDQVIHNCQGFLPPHVPFFPGTPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWPIPWVSQPPPLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEHEQQKDNKTEKCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKIDEKNHKTEASPVLQVNPAALSRSIKFHESS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27555012 27557633 - MELO3C009859.2.1 Cme04g01994 326255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g01994 514 Pfam Dof domain, zinc finger 153 210 IPR003851 GO:0003677|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 412 434 - -
Cme04g01994 514 ProSiteProfiles Zinc finger Dof-type profile. 156 210 IPR003851 GO:0003677|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 293 318 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 140 154 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 1 156 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 73 95 - -
Cme04g01994 514 ProSitePatterns Zinc finger Dof-type signature. 158 194 IPR003851 GO:0003677|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 19 33 - -
Cme04g01994 514 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 513 - -
Cme04g01994 514 MobiDBLite consensus disorder prediction 101 139 - -
Cme04g01994 514 PANTHER CYCLIC DOF FACTOR 2 1 513 IPR045174 GO:0003700|GO:0006355
Cme04g01994 514 MobiDBLite consensus disorder prediction 394 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g01994 - - - cmo:103486992 1051.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01994 Cme-Chr4:27555012 Cme12g01987 Cme-Chr12:25615555 4.30E-103 dispersed
Cme04g02074 Cme-Chr4:28135944 Cme04g01994 Cme-Chr4:27555012 1.46E-71 transposed
Cme10g00408 Cme-Chr10:2599811 Cme04g01994 Cme-Chr4:27555012 3.60E-93 wgd
Cme02g01879 Cme-Chr2:25356039 Cme04g01994 Cme-Chr4:27555012 9.09E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1560 . . . . Bpe02g01453 Bpe14g00173 . . Cmo14g00585 Cmo11g01039 . Cma14g00586 Car11g00855 . . Cpe03g00467 . . . . . . . . Cla10g01453 Cam10g1162 Cec10g1537 Cco10g1513 Clacu10g1511 Cmu10g2275 Cre10g1660 . . . . . Csa05g02462 Chy04g01555 Cme04g01994 Blo17g00365 Blo18g00391 . . . . Bma01g01039 Bma02g00393 . . . . . . . Cpe04g00052 . Bhi11g02870 . . . Hepe05g0758 . . . . . . . . . . Csa03g03750 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT1G29160 55.6 3.7e-44 174.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 1.2e-39 159.8
Cme09g01866 . 56 151 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.4e-42 168.7
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT2G34140 54.3 1.2e-42 169.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 7.8e-39 157.1
Cme04g02612 CCT,ECH 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.6e-40 163.7
Cme10g00889 . 33 163 C2C2-Dof Transcription Factor Family AT2G37590 62.4 9.8e-38 154.5
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT2G37590 64.0 2.2e-37 153.3
Cme12g00200 CCT,ECH 66 140 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Cme09g01866 . 56 149 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.3e-44 174.9
Cme04g01994 . 136 514 C2C2-Dof Transcription Factor Family AT5G39660 51.4 1.5e-81 300.4
Cme12g00200 CCT,ECH 1 140 C2C2-Dof Transcription Factor Family AT5G02460 56.5 1.4e-38 157.5
Cme08g02396 CCT,ECH 43 123 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.0e-37 153.7
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT5G02460 62.1 4.5e-37 152.5
Cme04g02612 CCT,ECH 54 137 C2C2-Dof Transcription Factor Family AT3G55370 78.6 4.2e-37 152.5
Cme02g01804 CCT 28 335 C2C2-Dof Transcription Factor Family AT5G60850 50.5 7.0e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008734 0 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41226 PF02701 zf-Dof 2.20E-32 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g01994 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0