Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02012 ATGCGTCCAATTTTGATGAAAGGCCATGAACGGCCTTTAACTTTCCTCAAGTACAATAGGGATGGCGATCTTCTTTTCTCCTGCGCCAAGGATCATAACCCCACCGTCTGGTACGCCGACAACGGCGAGCGGTTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGTGATGTCTCCAGAGATTCAATGCGGCTTATCACTGGAAGTGCGGATCAGACGGCAAAATTATGGAACGTACAGACTGGACAGCAACTCTTCTCCTTCAATTTCGATTCACCTGCTAGGGCAGTTGATTTCTCTGTCGGTGATAAGCTTGCAGTTATTACCACTGATCCTTTTGTGGAGTTGCCTTCTGCTATTCATGTTAAACGCATTGCTAGAGACCCCTCGGAACAGACTGGTGAATCTGTGCTGCTTCTTAAAGGTCCCCAAGGAAGAATCAATAGAGCTGTTTGGGGACCTTTAAATAAGACCATCATTAGTGGAGGAGAAGATGCCGTTGTTCGCATTTGGGATTCTGAGACAGGTAAACTTTTGAAAGAATCAGACAAGGAGACAGGCCATAAGAAAACAATAACTTCCCTTACGAAAGCCTCTGATGGTTCACATTTTATCACTGGGTCTTTGGACAAGTCTGCTAAGCTGTGGGATACTAGAACATTGACGCTTATCAAGACGTATGTGACAGAACGCCCAGTCAATGCAGTTACAATGTCTCCACTTCTTGACCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCTGTGACAACAACTGATCATCGTGCTGGAAAGTTTGAAGCTAAATTTTATGACAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCCATCAATGCTCTCGCTTTCAATCCCGATGGAAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTCGACCCAGATTACTTCAACATCAAGATTTAA 981 44.95 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFVELPSAIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISGGEDAVVRIWDSETGKLLKESDKETGHKKTITSLTKASDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27667233 27670783 + MELO3C009841.2.1 Cme04g02012 326273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02012 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Cme04g02012 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Cme04g02012 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Cme04g02012 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Cme04g02012 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743|GO:0005737|GO:0005852
Cme04g02012 326 Gene3D - 1 326 IPR015943 GO:0005515
Cme04g02012 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Cme04g02012 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cme04g02012 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Cme04g02012 326 SMART WD40_4 135 174 IPR001680 GO:0005515
Cme04g02012 326 SMART WD40_4 222 261 IPR001680 GO:0005515
Cme04g02012 326 SMART WD40_4 1 38 IPR001680 GO:0005515
Cme04g02012 326 SMART WD40_4 277 316 IPR001680 GO:0005515
Cme04g02012 326 SMART WD40_4 41 80 IPR001680 GO:0005515
Cme04g02012 326 SMART WD40_4 177 219 IPR001680 GO:0005515
Cme04g02012 326 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Cme04g02012 326 Pfam WD domain, G-beta repeat 142 174 IPR001680 GO:0005515
Cme04g02012 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Cme04g02012 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Cme04g02012 326 CDD WD40 7 314 - -
Cme04g02012 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Cme04g02012 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01262 Cme-Chr2:18225004 Cme04g02012 Cme-Chr4:27667233 4.89E-41 dispersed
Cme04g02012 Cme-Chr4:27667233 Cme01g02083 Cme-Chr1:29673065 5.72E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02012 K03246 - csv:101211648 662.529