Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02012 | ATGCGTCCAATTTTGATGAAAGGCCATGAACGGCCTTTAACTTTCCTCAAGTACAATAGGGATGGCGATCTTCTTTTCTCCTGCGCCAAGGATCATAACCCCACCGTCTGGTACGCCGACAACGGCGAGCGGTTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGTGATGTCTCCAGAGATTCAATGCGGCTTATCACTGGAAGTGCGGATCAGACGGCAAAATTATGGAACGTACAGACTGGACAGCAACTCTTCTCCTTCAATTTCGATTCACCTGCTAGGGCAGTTGATTTCTCTGTCGGTGATAAGCTTGCAGTTATTACCACTGATCCTTTTGTGGAGTTGCCTTCTGCTATTCATGTTAAACGCATTGCTAGAGACCCCTCGGAACAGACTGGTGAATCTGTGCTGCTTCTTAAAGGTCCCCAAGGAAGAATCAATAGAGCTGTTTGGGGACCTTTAAATAAGACCATCATTAGTGGAGGAGAAGATGCCGTTGTTCGCATTTGGGATTCTGAGACAGGTAAACTTTTGAAAGAATCAGACAAGGAGACAGGCCATAAGAAAACAATAACTTCCCTTACGAAAGCCTCTGATGGTTCACATTTTATCACTGGGTCTTTGGACAAGTCTGCTAAGCTGTGGGATACTAGAACATTGACGCTTATCAAGACGTATGTGACAGAACGCCCAGTCAATGCAGTTACAATGTCTCCACTTCTTGACCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCTGTGACAACAACTGATCATCGTGCTGGAAAGTTTGAAGCTAAATTTTATGACAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCCATCAATGCTCTCGCTTTCAATCCCGATGGAAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTCGACCCAGATTACTTCAACATCAAGATTTAA | 981 | 44.95 | MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFVELPSAIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISGGEDAVVRIWDSETGKLLKESDKETGHKKTITSLTKASDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27667233 | 27670783 | + | MELO3C009841.2.1 | Cme04g02012 | 326273 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02012 | 326 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 67 | 81 | IPR019775 | - | |
Cme04g02012 | 326 | PRINTS | G protein beta WD-40 repeat signature | 67 | 81 | IPR020472 | - | |
Cme04g02012 | 326 | PRINTS | G protein beta WD-40 repeat signature | 161 | 175 | IPR020472 | - | |
Cme04g02012 | 326 | PRINTS | G protein beta WD-40 repeat signature | 206 | 220 | IPR020472 | - | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 187 | 228 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | Hamap | Eukaryotic translation initiation factor 3 subunit I [EIF3I]. | 1 | 326 | IPR027525 | GO:0003743|GO:0005737|GO:0005852 | |
Cme04g02012 | 326 | Gene3D | - | 1 | 326 | IPR015943 | GO:0005515 | |
Cme04g02012 | 326 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I | 1 | 326 | - | - | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 284 | 314 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 284 | 314 | - | - | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 142 | 183 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I | 1 | 326 | - | - | |
Cme04g02012 | 326 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 161 | 175 | IPR019775 | - | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 48 | 85 | - | - | |
Cme04g02012 | 326 | SMART | WD40_4 | 135 | 174 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | SMART | WD40_4 | 222 | 261 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | SMART | WD40_4 | 1 | 38 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | SMART | WD40_4 | 277 | 316 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | SMART | WD40_4 | 41 | 80 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | SMART | WD40_4 | 177 | 219 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | Pfam | WD domain, G-beta repeat | 43 | 80 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | Pfam | WD domain, G-beta repeat | 142 | 174 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | Pfam | WD domain, G-beta repeat | 188 | 219 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | Pfam | WD domain, G-beta repeat | 283 | 314 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | CDD | WD40 | 7 | 314 | - | - | |
Cme04g02012 | 326 | SUPERFAMILY | WD40 repeat-like | 4 | 314 | IPR036322 | GO:0005515 | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 142 | 179 | - | - | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 6 | 47 | IPR001680 | GO:0005515 | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 187 | 222 | - | - | |
Cme04g02012 | 326 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 48 | 89 | IPR001680 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01262 | Cme-Chr2:18225004 | Cme04g02012 | Cme-Chr4:27667233 | 4.89E-41 | dispersed | |
Cme04g02012 | Cme-Chr4:27667233 | Cme01g02083 | Cme-Chr1:29673065 | 5.72E-10 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02012 | K03246 | - | csv:101211648 | 662.529 |