Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02013 ATGGGGATTAAATTATCAAAGCCGAATCAGGGGAAGGTGGAAAACCTTAGTCTGCAGCACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGATATGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCAGAACGGATGCGTGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTTGACGATAATCATGTTCCACATCTGCAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACAACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGATACGTCGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTCATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCATGTAGGAGGGAATTGCAAAGAATTCGACTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTTGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAAATGTTGCAGACAATTTAAGAGAGGATATGAAAGAAGTAATAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCTCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACAACAAAACCTGCCTTGATTACAATTTTGAGAAGCCTCTACCGCTATGCAATTTGATTGAACAGCTAACTGGAGACGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGTCGTCTCTTCTATGCATGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGACATCATCCGATGACGATGATCCTCAAAATGATTTGTCTTAA 1269 42.47 MGIKLSKPNQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVHNGPPEVKLPKPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRKCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYNKTCLDYNFEKPLPLCNLIEQLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSTSSDDDDPQNDLS 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27675599 27680622 + MELO3C009840.2.1 Cme04g02013 326274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02013 422 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Cme04g02013 422 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Cme04g02013 422 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Cme04g02013 422 ProSiteProfiles C2 tensin-type domain profile. 241 402 IPR014020 -
Cme04g02013 422 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 294 401 IPR035892 -
Cme04g02013 422 Pfam C2 domain of PTEN tumour-suppressor protein 339 399 IPR014020 -
Cme04g02013 422 SMART PTEN_C2_2 223 401 IPR014020 -
Cme04g02013 422 PANTHER BNAC03G16750D PROTEIN 1 414 - -
Cme04g02013 422 Gene3D - 285 404 - -
Cme04g02013 422 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cme04g02013 422 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Cme04g02013 422 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Cme04g02013 422 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 414 - -
Cme04g02013 422 Pfam Tyrosine phosphatase family 144 186 IPR026893 GO:0004721
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02013 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101212127 822.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02013 Cme-Chr4:27675599 Cme08g00594 Cme-Chr8:3786333 4.31E-44 dispersed
Cme04g02013 Cme-Chr4:27675599 Cme01g00074 Cme-Chr1:521937 2.12E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006631 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02013 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0