Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02013 ATGGGGATTAAATTATCAAAGCCGAATCAGGGGAAGGTGGAAAACCTTAGTCTGCAGCACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGATATGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCAGAACGGATGCGTGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTTGACGATAATCATGTTCCACATCTGCAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACAACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGATACGTCGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTCATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCATGTAGGAGGGAATTGCAAAGAATTCGACTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTTGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAAATGTTGCAGACAATTTAAGAGAGGATATGAAAGAAGTAATAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCTCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACAACAAAACCTGCCTTGATTACAATTTTGAGAAGCCTCTACCGCTATGCAATTTGATTGAACAGCTAACTGGAGACGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGTCGTCTCTTCTATGCATGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGACATCATCCGATGACGATGATCCTCAAAATGATTTGTCTTAA 1269 42.47 MGIKLSKPNQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVHNGPPEVKLPKPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRKCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYNKTCLDYNFEKPLPLCNLIEQLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSTSSDDDDPQNDLS 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27675599 27680622 + MELO3C009840.2.1 Cme04g02013 326274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02013 422 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Cme04g02013 422 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Cme04g02013 422 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Cme04g02013 422 ProSiteProfiles C2 tensin-type domain profile. 241 402 IPR014020 -
Cme04g02013 422 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 294 401 IPR035892 -
Cme04g02013 422 Pfam C2 domain of PTEN tumour-suppressor protein 339 399 IPR014020 -
Cme04g02013 422 SMART PTEN_C2_2 223 401 IPR014020 -
Cme04g02013 422 PANTHER BNAC03G16750D PROTEIN 1 414 - -
Cme04g02013 422 Gene3D - 285 404 - -
Cme04g02013 422 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cme04g02013 422 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Cme04g02013 422 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Cme04g02013 422 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 414 - -
Cme04g02013 422 Pfam Tyrosine phosphatase family 144 186 IPR026893 GO:0004721
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02013 Cme-Chr4:27675599 Cme08g00594 Cme-Chr8:3786333 4.31E-44 dispersed
Cme04g02013 Cme-Chr4:27675599 Cme01g00074 Cme-Chr1:521937 2.12E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02013 K01110 - csv:101212127 822.387