Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02013 | ATGGGGATTAAATTATCAAAGCCGAATCAGGGGAAGGTGGAAAACCTTAGTCTGCAGCACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGATATGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCAGAACGGATGCGTGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTTGACGATAATCATGTTCCACATCTGCAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACAACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGATACGTCGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTCATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCATGTAGGAGGGAATTGCAAAGAATTCGACTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTTGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAAATGTTGCAGACAATTTAAGAGAGGATATGAAAGAAGTAATAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCTCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACAACAAAACCTGCCTTGATTACAATTTTGAGAAGCCTCTACCGCTATGCAATTTGATTGAACAGCTAACTGGAGACGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGTCGTCTCTTCTATGCATGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGACATCATCCGATGACGATGATCCTCAAAATGATTTGTCTTAA | 1269 | 42.47 | MGIKLSKPNQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVHNGPPEVKLPKPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRKCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYNKTCLDYNFEKPLPLCNLIEQLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSTSSDDDDPQNDLS | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27675599 | 27680622 | + | MELO3C009840.2.1 | Cme04g02013 | 326274 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02013 | 422 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 207 | IPR029021 | - | |
Cme04g02013 | 422 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 122 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
Cme04g02013 | 422 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
Cme04g02013 | 422 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 402 | IPR014020 | - | |
Cme04g02013 | 422 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 294 | 401 | IPR035892 | - | |
Cme04g02013 | 422 | Pfam | C2 domain of PTEN tumour-suppressor protein | 339 | 399 | IPR014020 | - | |
Cme04g02013 | 422 | SMART | PTEN_C2_2 | 223 | 401 | IPR014020 | - | |
Cme04g02013 | 422 | PANTHER | BNAC03G16750D PROTEIN | 1 | 414 | - | - | |
Cme04g02013 | 422 | Gene3D | - | 285 | 404 | - | - | |
Cme04g02013 | 422 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
Cme04g02013 | 422 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
Cme04g02013 | 422 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791 | |
Cme04g02013 | 422 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 414 | - | - | |
Cme04g02013 | 422 | Pfam | Tyrosine phosphatase family | 144 | 186 | IPR026893 | GO:0004721 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02013 | Cme-Chr4:27675599 | Cme08g00594 | Cme-Chr8:3786333 | 4.31E-44 | dispersed | |
Cme04g02013 | Cme-Chr4:27675599 | Cme01g00074 | Cme-Chr1:521937 | 2.12E-45 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02013 | K01110 | - | csv:101212127 | 822.387 |