Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02015 ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAGGTCGAAGACATCATCCTTCGCAAAGTCTTCCTAATTTCTCTCACCGATTCCTCCGATTCCGATTCCAGAATCGTCTATCTCGAGCAAACCGCCGCCGAACTTCTTAGCGAGGGCAAACCATTGAGGATTTCAAGGGATGTAATGGAGCGCATCATAATCGATCGTCTTTCCGCTCATATCCCCTCCGCCGAACCCCCTTTTCAGTACCTAATTGGGTGCTACCGTCGAGCTCACGACGAGACTAAGAAAATCGCTTCCATGAAGGATAAGACTTTGCGCTCTGATATGGAAATTGCTCTTAAGCAAGCCAAGAAGTTGACGATTTCGTATTGTAGGATTCATTTAGGGAATCCTGAATTGTTTTCTTCCGGTGCCGATTTAGGTACTAACTCCAATACTTCGCCTTTGCTTCCTTTGATTTTCTCTGAGGTCGGTGGGAGCTCCATGGATGGATTTGGGGCTAGTACTAGTGTTGGTGGAGCCTATCAGTCCCCTCCGGGTTTCCTGGAGGAGTTTCTCCGTGACTCGGATTTTGATACATTAGAACCCATTTTGAAGGGGTTGTATGAGGATTTAAGGGGTAGCGTCCTTAAAGTTTCTGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCTCTTAGGTATCTGGTCAGCTTTCCTGTTGGTGCTAAGTCTCTTGTGAATCACCCTTGGTGGATTCCTACTGGTAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGCCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCAGCTGATTTACTATCTTCATTCACTACAATTAAAACAGTCATGAATAATTTATATGATGGCCTTTCGGAAGTTCTTCTCTCCCTTCTCAAGAACACAGAGACCCGTGAAAATGTTCTCGAGTATCTGGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGCATGTTTGTTAATCTCAGTGCCATCATGTTACGTCTTTGTGAGCCTTTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATAGTAACCGATTGGAGTTGAGAGGATTAACTGCTCTACATGCTTCATCTGAAGAAGTTACCGAGTGGATTAATAATGGTACTCAGTTGAGAACTGATAACTCTGGGCAGTCCACCGACAGTGAAAGTCGCTTGCTACAATCCCAGGAGGCTTCCAGTTCTGGCAGTAATTCTACTATTGGATCTTCTACTGCAAAAGCAAGATCGAGTAGTGATAAAACTAGGTACCCGTTTATATGCGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACACTTAAAGCCATGCAGGGACAAGGCCCTGCCCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAACTTTGTTATGAAGCTCAAATACTGAGGGATGGGACACTGATCCAGCAAGCTCTTACTTTCTATCGGTTAATGGTCATCTGGTTAGTTGGTTTGGTTGGTGGTTTTAAAATGCCTCTTCCATCAGCTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGCATCAATTTGGATGATTTTATGAACTTCATTATCATGTTCATGGCAAGTCCAGAATATATTAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGGTTCATCTGTAACGGCAACACTATTTGAAGGCCACCAACTATCGCTTGAGTATCTTGTTAGGAATCTTTTAAAACTCTATGTAGACATCGAGTTTACTGGATCACATACACAGTTTTATGACAAGTTTAACATCCGCCATAACATTGCGGAGCTTCTGGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGCGTTTACTTGAATTTCTTGAACTTCCTAATCAACGATAGCATATATCTTCTTGACGAAAGTCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACTGCAGAATGGGAACGGCGACCTGCTCAAGAGAGGCAGGAAAGAACTCGGCTCTTTCATTCCCAGGAAAATATCATCCGAATCGATATGAAATTAGCAAATGAGGACGTGAGTATGTTGGCATTTACTTCAGAGCAAATCACAGCTCCTTTCCTACTTCCAGAGATGGTCGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCTTGCAACTTGTTGGTCCTCAGCGAAAATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCAAGAGCGTTGCTTAAGCAGATTGTTCACATATATGTTCATCTGGCAAGAGGCGATACGGAGAATATTTTCCCAGCTGCCATTTCAAAGGATGGCCGATCGTACAACGAGCAGTTGTTCACTGCTGCAGCAGCTGTACTTCGACGTATTGGAGAAGATAGTAGGATAATACAGGAGTTTACTGACCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCAATGGATGCTGAAGCTACTCTAGGAGATATACCTGATGAATTCCTCGACCCGATCCAATACACATTAATGAAGGACCCTGTGATCTTACCTTCTTCGAGGATCACTGTCGACAGACCCGTCATTCAAAGACATCTCCTCAGCGATAGCACCGACCCATTCAACCGGTCTCATCTGACCGCAGACATGCTAATACCGAACGAAGAGTTGAAAGCAAGAATCAAAGAATTTATTAGGTCGCAAGAACTGAAGAAGCAACTAGATGGAGGAGGGGTTGCAATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGTGGAGAAATGTTGATTGATTAA 3132 43.52 MATSKPQRSPEEVEDIILRKVFLISLTDSSDSDSRIVYLEQTAAELLSEGKPLRISRDVMERIIIDRLSAHIPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSDMEIALKQAKKLTISYCRIHLGNPELFSSGADLGTNSNTSPLLPLIFSEVGGSSMDGFGASTSVGGAYQSPPGFLEEFLRDSDFDTLEPILKGLYEDLRGSVLKVSALGNFQQPLRALRYLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLSEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELRGLTALHASSEEVTEWINNGTQLRTDNSGQSTDSESRLLQSQEASSSGSNSTIGSSTAKARSSSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVIWLVGLVGGFKMPLPSACPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPRALLKQIVHIYVHLARGDTENIFPAAISKDGRSYNEQLFTAAAAVLRRIGEDSRIIQEFTDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPNEELKARIKEFIRSQELKKQLDGGGVAMQSSKATIQPTSGEMLID 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27692352 27701637 - MELO3C009839.2.1 Cme04g02015 326276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02015 1043 Coils Coil 521 548 - -
Cme04g02015 1043 Pfam Ubiquitin elongating factor core 261 926 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Cme04g02015 1043 MobiDBLite consensus disorder prediction 421 460 - -
Cme04g02015 1043 CDD RING-Ubox_UBE4A 945 1013 - -
Cme04g02015 1043 ProSiteProfiles U-box domain profile. 942 1016 IPR003613 GO:0004842|GO:0016567
Cme04g02015 1043 PANTHER - 1 1020 - -
Cme04g02015 1043 SUPERFAMILY RING/U-box 935 1013 - -
Cme04g02015 1043 PANTHER UBIQUITINATION FACTOR E4 1 1020 IPR045132 GO:0000151|GO:0030433|GO:0034450
Cme04g02015 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 942 1020 IPR013083 -
Cme04g02015 1043 SMART Ubox_2 946 1009 IPR003613 GO:0004842|GO:0016567
Cme04g02015 1043 Pfam U-box domain 943 1013 IPR003613 GO:0004842|GO:0016567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02015 K10597 - csv:101211398 1997.25