Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02021 ATGGAAGTCCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCGGTTGCGGCGGCAGTGGTGGTACTGCTGGCGTCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGACTACTAATGTGAACTATAGTACCTGGGCTCAGGGAAAGCACTTCTACTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGATTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCCGGCCTTATTACTTCATAAGTGGCAAAGGCTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCGGCCTTGCCCATGAACGAAAAGAGCAGTGCTCTTAGATCTACCTACACTGGCCACACCCCATTCGTTTTAACCGCTGTTTTTGCCATTGCTGCTGTATTTGAAGCTTTCTCCCGGGTTTGGTAG 543 50.09 MEVLRTRVGGSGLLVAVAAAVVVLLASVPEVSATRWTVGGNMGWTTNVNYSTWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVEHLPPPPSALPMNEKSSALRSTYTGHTPFVLTAVFAIAAVFEAFSRVW 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27730162 27731987 + MELO3C009833.2.1 Cme04g02021 326282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02021 180 PANTHER BLUE COPPER PROTEIN 14 172 IPR039391 GO:0009055
Cme04g02021 180 Pfam Plastocyanin-like domain 44 126 IPR003245 GO:0009055
Cme04g02021 180 Gene3D - 32 135 IPR008972 -
Cme04g02021 180 SUPERFAMILY Cupredoxins 33 132 IPR008972 -
Cme04g02021 180 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055
Cme04g02021 180 PANTHER LAMIN-LIKE PROTEIN 14 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02021 - - - csv:101210415 334.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01723 Cme-Chr4:24698574 Cme04g02021 Cme-Chr4:27730162 2.04E-30 dispersed
Cme04g02021 Cme-Chr4:27730162 Cme09g01685 Cme-Chr9:21535967 4.10E-20 dispersed
Cme04g02021 Cme-Chr4:27730162 Cme04g02023 Cme-Chr4:27735893 3.80E-18 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01900 . 33 167 Phytocyanin Superfamily AT1G48940 53.5 1.0e-36 150.2
Cme04g02021 . 24 180 Phytocyanin Superfamily AT5G15350 54.4 3.2e-48 188.3
Cme12g01900 . 33 167 Phytocyanin Superfamily AT1G48940 53.5 1.0e-36 150.2
Cme04g02021 . 24 180 Phytocyanin Superfamily AT5G15350 54.4 3.2e-48 188.3
Cme05g00219 . 16 226 Phytocyanin Superfamily AT1G08500 54.6 9.1e-59 223.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02021 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0