Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02051 ATGAATATGGAGCAGTATCTTCTGAAAGACTTCGAAGTCGAGCCAAAACATCCTTCAGAGCAAGCCTTGAGGAGATGGCGATCTGCCGTCTCAATCGTCAGAAATCGGCGACGGAGGTTCCGAAACATTGCAGATCTCGACAAACGCTCCGAGGCTGAGAAGAAGAAACTCAAAATCCAGGAAACAATTCGAGTTGCTCTTTATGTTCACAAGGCAGCATTACAATTTATCGATGCCGTGAATCGGGATGAGTACCATCTGTCAGATGAGGCTAGGAATGCTGGCTTTAGTATTCATCCAGATGAGCTTGCATCCATTGTTCGTAGCCATGATTACAAGGCATTGAAATTTTATGGAGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTCTCACTAGATGCTGGTGTCAGTGAAAAGGATACGTCCAAGAGACAAGAGATTTATGGTTATAATCGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTTTGTATGGGAAGCATTACACGACGTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGAATTGCCACAGAAGGATGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACAAGGAAAAGAAAAAAATTTATGTTGATGTCACTAGGGAGGGGCTGAGGAAAAAAGTTTTGATCTACGACTTGGTTGTTGGAGACATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACAAAGATGAGGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACTGAATGGGGAAAGTTGATGGAAACTCTCAGTGAGGGAGGAGAAGATGAGACTCCATTGCAGGTGAAGCTGAATGGTGTTGCAACTCTTATTGGTAAAATTGGATTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTTGGGGAGAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCTGTTGCAGTTACCATAATAGTTGTTGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTCGCCTTTGCTATGAAGAAACTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGTTCAGCCACTTGCATTTGCACAGATAAGACCGGGACATTAACCACAAACCATATGATAGTTAGCCGTGCATGGGTATGTGAAAATTTTATGGAGAATAAAGACCATGGAAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGACGTTTTAGGCATATTATTGCAGTCCATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAGGATGGAAAGAACTCAATTGTTGGTGGAACACCAACAGAATCAGCACTACTAGAGTTTGGCATCCATTTGGGTGGAGATTTTCGTGCCCAACGTACAGAATATAAGATACTTAAAGTAGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACACGTATATAGATTCCAATGGAGAATCTATTGATTTAAAAGAAGAGAAGGTAAATAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACGCTTTGCTTGGCCTTCAAAGATATAGGGGACTCTAGCGGCAAAACTATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCCGTACGCCCAGGCGTCAAGGAAGCCGTTAAAACTTGCTTAGCTGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACGGCGAAGGCTATTGCTAAAGAATGTGGTATACTAACAAATGATGGTTTAGCTATAGAAGGACCAGACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAATTATACCAAAAGTCCAGGTGATGGCTCGATCCTTGCCACTGGACAAATACACGTTGGTTAACAATTTGCGGAGTATGGGCGAGGTCGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCATTGCATGAGTCAGATATTGGACTAGCTATGGGAATTGCTGGGACTGAGGTGGCCAAAGAAAATGCTGATGTCATCATAATGGATGACAATTTTTCAACAATTGTAAATGTTGCGAGATGGGGGCGTGCGGTGTACATTAACATACAAAAATTTGTGCAGTTTCAGCTAACCGTTAACATTGTTGCTCTGGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCTCTGGCCACAGAGCCTCCAAACGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTATTGGTCAGAGTATATATCAACTTGCTGTTCTTGCTGTTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTGATGGATCTGATTCCACCATAGTTCTAAACACTTTGATTTTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATAGAAAAGATCAACATATTCCGAGGGATGTTCAGCAGCTGGATATTTATGGGAGTAATGGTAGCCACAGTGGGGTTTCAAATAATAATTATAGAATTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCCGGGAACTGTGGGGACTGAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAATTGTGTTGAAGCTCATCCCTGTTCGTAAAGAAGAAGCATTCACGGCCCAGCATGATGGCTATGAACCACTCCCTTCTGGCCCAGAGTTGGCTTGA 3111 41.85 MNMEQYLLKDFEVEPKHPSEQALRRWRSAVSIVRNRRRRFRNIADLDKRSEAEKKKLKIQETIRVALYVHKAALQFIDAVNRDEYHLSDEARNAGFSIHPDELASIVRSHDYKALKFYGGVEGLSRKVSVSLDAGVSEKDTSKRQEIYGYNRYTEKPSRPFWVFVWEALHDVTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDKEKKKIYVDVTREGLRKKVLIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNKDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSATCICTDKTGTLTTNHMIVSRAWVCENFMENKDHGSVDKLKSEISEDVLGILLQSIFQNTSCEVTKDKDGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDTYIDSNGESIDLKEEKVNNATNVINSFANEALRTLCLAFKDIGDSSGKTIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTNDGLAIEGPDFRNLSPEQMKQIIPKVQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFGGKQLLGLDGSDSTIVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFMGVMVATVGFQIIIIEFLGAFASTVPLSRELWGLSVLIGFVSMPVAIVLKLIPVRKEEAFTAQHDGYEPLPSGPELA 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27914494 27925867 - MELO3C009809.2.1 Cme04g02051 326312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02051 1036 Gene3D - 135 335 - -
Cme04g02051 1036 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Cme04g02051 1036 Pfam Cation transporting ATPase, C-terminus 837 1011 IPR006068 -
Cme04g02051 1036 Coils Coil 601 621 - -
Cme04g02051 1036 SFLD C1.7: P-type atpase like 434 804 - -
Cme04g02051 1036 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166
Cme04g02051 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 204 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g02051 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 550 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g02051 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g02051 1036 Pfam Cation transport ATPase (P-type) 508 592 - -
Cme04g02051 1036 Gene3D - 462 657 IPR023299 GO:0000166
Cme04g02051 1036 PANTHER CALCIUM-TRANSPORTING ATPASE 5 1020 - -
Cme04g02051 1036 SFLD p-type atpase 434 804 IPR044492 -
Cme04g02051 1036 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 51 IPR024750 GO:0005516
Cme04g02051 1036 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Cme04g02051 1036 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Cme04g02051 1036 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cme04g02051 1036 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cme04g02051 1036 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Cme04g02051 1036 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Cme04g02051 1036 Gene3D - 167 1011 - -
Cme04g02051 1036 Gene3D - 449 797 IPR023214 -
Cme04g02051 1036 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Cme04g02051 1036 CDD P-type_ATPase_Ca_PMCA-like 142 885 - -
Cme04g02051 1036 Pfam E1-E2 ATPase 235 430 - -
Cme04g02051 1036 SUPERFAMILY HAD-like 451 857 IPR036412 -
Cme04g02051 1036 Pfam Cation transporter/ATPase, N-terminus 119 184 IPR004014 -
Cme04g02051 1036 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g02051 1036 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g02051 1036 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g02051 1036 Gene3D - 18 79 - -
Cme04g02051 1036 SMART Cation_ATPase_N_a_2 120 189 IPR004014 -
Cme04g02051 1036 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cme04g02051 1036 PANTHER CATION TRANSPORTING ATPASE 5 1020 - -
Cme04g02051 1036 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02051 Cme-Chr4:27914494 Cme09g01069 Cme-Chr9:14953029 0 dispersed
Cme04g02051 Cme-Chr4:27914494 Cme08g00653 Cme-Chr8:4271327 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02051 K01537 - csv:101206199 1932.15