Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02058 ATGGCTTCTTCGTCTTCTGATCCTGGCTTCAAACACGAACCCGGTGCCTGTAGCACTGCTGCTGCTGGAAGAGGGACGGCGGAATCTTCCGAGGTTGTTATGGCAAATGATCAGCTTTTACTGTATAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCCAAAGAACGCATTAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCCATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGAATTTACAGGAGCATATGATGAAGAAGAGGCTGCTGCTAGGGCTTACGATTTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTCGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGAAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGAAGTCTCTCAAGTCGATGGGATCCTTCATTTGGTCGCATGCCAGGCCCTGATTATGTTAGCAGCATAAATTATGGTGCTGGAGACGATCAAGCAACTGAAAGTGAATTCGTCCACAACTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCGAACAAAACTCGAACAGCCAGTGCAGGCTCAAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACTTCTGGAGTAAAGAAGCCTGCTTCCAAGATCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAACTAACAACGAGAATGATGAGAACGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAAAGTGGTTGAAACACCTACTACAAGTCATGGTGGTGATCCCAGTGAGAGATATGGGGTTACTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACCGTTGATCCTTTGGGAGATCCTATTCATTGGACATCTCTCGCTTCTGTTCTTCCTACCGGACTTTCTCGCACAGCTGAGGTTACGAAAACTGAAACCTCTTCAACTTACACTTTGTTTCGGGCTGAGGAATAA 1296 44.68 MASSSSDPGFKHEPGACSTAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQEFTGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRSLSSRWDPSFGRMPGPDYVSSINYGAGDDQATESEFVHNFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTTRPTEPYEMPCLGTSGVKKPASKISALSILSRSAAYKSLQEKALKLQETNNENDENENKNTVNKIDHGKVVETPTTSHGGDPSERYGVTFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLASVLPTGLSRTAEVTKTETSSTYTLFRAEE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27963717 27969020 - MELO3C009804.2.1 Cme04g02058 326319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02058 431 Pfam AP2 domain 74 132 IPR001471 GO:0003700|GO:0006355
Cme04g02058 431 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677
Cme04g02058 431 MobiDBLite consensus disorder prediction 238 257 - -
Cme04g02058 431 PANTHER BNAA03G19580D PROTEIN 20 429 - -
Cme04g02058 431 SMART rav1_2 74 146 IPR001471 GO:0003700|GO:0006355
Cme04g02058 431 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Cme04g02058 431 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Cme04g02058 431 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700|GO:0006355
Cme04g02058 431 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 429 - -
Cme04g02058 431 Coils Coil 305 333 - -
Cme04g02058 431 MobiDBLite consensus disorder prediction 1 29 - -
Cme04g02058 431 MobiDBLite consensus disorder prediction 263 282 - -
Cme04g02058 431 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02058 Cme-Chr4:27963717 Cme02g01029 Cme-Chr2:15244527 6.76E-51 dispersed
Cme04g02058 Cme-Chr4:27963717 Cme08g00672 Cme-Chr8:4410391 1.06E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41230 PF00847 AP2 3.20E-11 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02058 K09285 - csv:101206434 810.831