Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02065 ATGGCCGACGCCGACCAACTCCCTCGCCGGAAACCCCTTGGGAATAAGCGCGCCAATAGAGACCCCGATTCCGCCACCGTCACGGCTCCTTGTGGCGCATGCAAGTTTCTCAGGAGAAAATGTATCAATGGTTGTATCTTTGCGCCACATTTCGCCTCGGATCAGGGTGCTGCACGTTTCGCTGCTGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTGCATATTCCGGTCAGCCGTCGAAACGACGCTGTTGTCACTATTTCTTATGAGGCTCAGGCCAGACTGTCCGACCCTGTCTATGGCTGTGTCTCTACTGTTCTTGCCCTACAACAACAGGTAGCATCTCTTCAGGCGGAGCTTGCGGCGGTTCAAGCTCAAGTGATAAGCAGCAGGTTGGCATTTGCAGCTGCAGTTCAAAACTCACACCCATCCCAAGTCGGAGTTCTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCCACTCATAATGCAATCAACTTGAGTAGTTTTGCTTCCAATTATGACCTTCCTACTGAGACTGCCCCGTCTTCTCATCACTTAGAGCCTCCTCACTTCCCCCACCGCCCAATCGACGAGGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCTATCTTTGCTGATTAG 675 52.89 MADADQLPRRKPLGNKRANRDPDSATVTAPCGACKFLRRKCINGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQVISSRLAFAAAVQNSHPSQVGVLQPAYSNNSSISVSASTSTHNAINLSSFASNYDLPTETAPSSHHLEPPHFPHRPIDEEEDEENSQLPAIFAD 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28030339 28033463 - MELO3C030713.2.1 Cme04g02065 326326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02065 224 Pfam Lateral organ boundaries (LOB) domain 30 128 IPR004883 -
Cme04g02065 224 Coils Coil 110 130 - -
Cme04g02065 224 MobiDBLite consensus disorder prediction 1 26 - -
Cme04g02065 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 21 206 - -
Cme04g02065 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 21 206 - -
Cme04g02065 224 MobiDBLite consensus disorder prediction 186 224 - -
Cme04g02065 224 MobiDBLite consensus disorder prediction 1 18 - -
Cme04g02065 224 ProSiteProfiles LOB domain profile. 29 131 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01566 Cme-Chr4:22964703 Cme04g02065 Cme-Chr4:28030339 4.03E-51 dispersed
Cme04g02065 Cme-Chr4:28030339 Cme06g00253 Cme-Chr6:1538026 2.93E-45 dispersed
Cme04g02065 Cme-Chr4:28030339 Cme11g02516 Cme-Chr11:31667442 3.73E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41232 PF03195 LOB 3.20E-37 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02065 - - csv:101215818 387.111