Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02079 | ATGGATCGTCTCATCACCCTCGAACCCTCCAACCTCATCCCAATCCGAATCGAACCCCCCCACAAATGCTCCGGCGAGATCACCCTCCGGAACGTCATGTACACCATGCCTGTCGCCTTCCGTCTTCAGCCTCTCATCAAATCCCGCTACACTTTCAAGCCTCAATCCGGAATCATTCCTCCACTCGCTACTTTAACTGTCGAAATCCTTTACCATCTTCCACCCGGCGTCAATCTCCCCGATTCCTATCCTTATTCCGATGACTCTTTCCTCCTCCACAGCGTCGTCGTCCCCGGCGCCGCTATCAAAGACTCTTCCTCAAGCTTCGACTCCGTTCCTTCCGATTGGTTCACTACCAGAAAGAAACAGGTGTTTATCGACAGTGGGATTAAAGTTATGTTCGTGGGGTCGGCTGTGTTGGCGAGATTAGTGGCGGATGGGGCTATGGATGAGATTAGAGAGGTGTTGGAGAGGAGTGATCCGGTTTGGAGGGCGGTGGACTCTGTGGATGAAAAGGGGAGGACTCTCCTTCACTTGGCGATTGGGCAGGGGAGAGCGGATTTGGTGCAGTTGTTGTTGGAGTTCAATCCGGATGTGGGGAAAGTGGGGGAGAGTGGGATGACAGCCGTGGAGGCGGCGGCGGGGGCTGGGCAGGCGTTGATTGTGGAGCTGTTATTGGCGAGGAAGGCGAGTACGGAGCGGGGGGAAGGATCGGTTTTTGGAGCGATTCATTTGGCGGCGGCGGGAGGGCATGTGGAGGTGTTGAGGCTGCTATTGGTGAAAGGAGCTTGTGTTGATGCTCTGTCTAAGGATGGAGATACGGCACTCCATCTGGCCGTTCAAGAGCGCCGCCGTGATTGTGCTCGGTTGCTTCTCGCTAATGGCGCTAAACCTGATGTTCGTAGTGCCGAACAAGGAGATACGGCGTTGCACATGGCCGCAAGAATCGGCGACGAGCAAATCGTTAAGCTTTTAATTCAAAAAGGAGCCAACAAAGACATCCGAAACTGGGCCGGAAAGCGTCCATACGACGTTGCATTCGACCACTCCCACACCCGCCTCTTCGACGTCCTCCGTCTCGCCGACAAGCTTGCCACTGCCGCACGCAAGGGTGACGTCCGCTCAATCCAACTCCTCGTCGACAGTGGTGCTGCTATCAACAGTCGCGATCAAAACGGCTGGACAGCACTCCACAGAGCTGCCTTCAAGGGCCATACCGACGCCTCCAGAGCCCTCATTGATATTGGTATAGATGTCAATGCTAAGGACGACGACGGCTATACTGCACTTCACTGCGCTGTCGAGGCTGCTCATGATAACGTTGTCCAACTACTCGTCGAGAGAGGCGCCGACGTCGAGGCCGTGACGAATAAAGGGTTGAGTGCAATGCAAATTGCTCAGTCGATGCAGTATACGAGGACTATGAGGATTTTGATGCATGGTGGTGTGGGTAAAGATCACACCGACGTGCCACCGACGCGGACGCCGTCGTGGCAGGGATTGATCACGAAGAAGAAACAACAGAGTAAAGGGAGAGGGAGAATAAGGAATTTGAGGAGTACGGACTTTGATAAATCAGTGGCATTGTCAGTGGTGTGA | 1599 | 54.28 | MDRLITLEPSNLIPIRIEPPHKCSGEITLRNVMYTMPVAFRLQPLIKSRYTFKPQSGIIPPLATLTVEILYHLPPGVNLPDSYPYSDDSFLLHSVVVPGAAIKDSSSSFDSVPSDWFTTRKKQVFIDSGIKVMFVGSAVLARLVADGAMDEIREVLERSDPVWRAVDSVDEKGRTLLHLAIGQGRADLVQLLLEFNPDVGKVGESGMTAVEAAAGAGQALIVELLLARKASTERGEGSVFGAIHLAAAGGHVEVLRLLLVKGACVDALSKDGDTALHLAVQERRRDCARLLLANGAKPDVRSAEQGDTALHMAARIGDEQIVKLLIQKGANKDIRNWAGKRPYDVAFDHSHTRLFDVLRLADKLATAARKGDVRSIQLLVDSGAAINSRDQNGWTALHRAAFKGHTDASRALIDIGIDVNAKDDDGYTALHCAVEAAHDNVVQLLVERGADVEAVTNKGLSAMQIAQSMQYTRTMRILMHGGVGKDHTDVPPTRTPSWQGLITKKKQQSKGRGRIRNLRSTDFDKSVALSVV | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 28157425 | 28159671 | - | MELO3C009784.2.1 | Cme04g02079 | 326340 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 305 | 336 | - | - | |
| Cme04g02079 | 532 | PRINTS | Ankyrin repeat signature | 393 | 408 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | PRINTS | Ankyrin repeat signature | 441 | 455 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | Gene3D | Immunoglobulins | 1 | 132 | IPR013783 | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 172 | 199 | - | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 135 | IPR000535 | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 392 | 424 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 425 | 457 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 364 | 391 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SUPERFAMILY | Ankyrin repeat | 166 | 488 | IPR036770 | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 242 | 267 | - | - | |
| Cme04g02079 | 532 | SMART | ANK_2a | 425 | 454 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SMART | ANK_2a | 172 | 201 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SMART | ANK_2a | 359 | 388 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SMART | ANK_2a | 392 | 421 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SMART | ANK_2a | 238 | 267 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SMART | ANK_2a | 271 | 300 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SMART | ANK_2a | 205 | 234 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | SMART | ANK_2a | 305 | 334 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 271 | 302 | - | - | |
| Cme04g02079 | 532 | PANTHER | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 531 | - | - | |
| Cme04g02079 | 532 | Pfam | Ankyrin repeats (many copies) | 412 | 466 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | Gene3D | - | 361 | 429 | IPR036770 | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 242 | 270 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | Gene3D | - | 133 | 236 | IPR036770 | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 305 | 337 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | Gene3D | - | 237 | 360 | IPR036770 | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 271 | 303 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 425 | 454 | - | - | |
| Cme04g02079 | 532 | MobiDBLite | consensus disorder prediction | 482 | 514 | - | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 172 | 204 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | MobiDBLite | consensus disorder prediction | 492 | 506 | - | - | |
| Cme04g02079 | 532 | Pfam | Ankyrin repeats (3 copies) | 243 | 336 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | Pfam | Ankyrin repeats (3 copies) | 167 | 231 | IPR002110 | GO:0005515 | |
| Cme04g02079 | 532 | PANTHER | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED | 1 | 531 | - | - | |
| Cme04g02079 | 532 | SUPERFAMILY | PapD-like | 2 | 147 | IPR008962 | - | |
| Cme04g02079 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 392 | 424 | - | - | |
| Cme04g02079 | 532 | Gene3D | - | 430 | 480 | IPR036770 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme04g02079 | Cme08g02076 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g01198 | Cme-Chr1:15197127 | Cme04g02079 | Cme-Chr4:28157425 | 9.26E-12 | dispersed | |
| Cme01g02150 | Cme-Chr1:30387342 | Cme04g02079 | Cme-Chr4:28157425 | 8.30E-07 | dispersed | |
| Cme03g00152 | Cme-Chr3:1944431 | Cme04g02079 | Cme-Chr4:28157425 | 2.60E-18 | dispersed | |
| Cme04g02079 | Cme-Chr4:28157425 | Cme10g00015 | Cme-Chr10:168996 | 6.03E-20 | dispersed | |
| Cme11g00913 | Cme-Chr11:12638989 | Cme04g02079 | Cme-Chr4:28157425 | 2.66E-06 | dispersed | |
| Cme04g02079 | Cme-Chr4:28157425 | Cme04g02615 | Cme-Chr4:32058804 | 1.92E-09 | transposed | |
| Cme04g02079 | Cme-Chr4:28157425 | Cme05g01445 | Cme-Chr5:23851862 | 3.15E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02079 | - | - | cmo:103486915 | 1030.39 |