Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02093 ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAGCTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTTTGATTCAAGAACATCAACCTACAAACTTCAAATCGTCTTCTAATTCTTCTTTTTCATCCTCTAACAATCATCATCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTACTTAAGAAAGTTAAGGAATCAACATCGCGGAGAAACATACCAGTAGTGATAATGTCATCAGAAAACGTACCTTCGAGAATCAACAGGTCTCGATCTATAATATCGCACGATCGGAAACTGATGGAATCGGATTGGATTAATTTGCGAAGCAGATGTTTAGAAGAAGGCGCGGAAGAATTTTTTCTGAAGCCAGTTCGATTGTGTGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAAGTGAAGGAAGATCAAAACCGAGAAGAAGAAGAATCAAGAACAGAGACCGAATTGAAATCGGTACAAGAAGAACAAGAGGAAATTGAGTTTGAGATGAAGAGTAAGAAAAGAAAGGGAGGTATGGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTTTGGAGGAGGAGATAAGAAGAAGAAGAAGAAGAAGGTACAGCAACAATTGCGTGGCGACGGCGATTTGA 774 40.05 MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQPTNFKSSSNSSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSRRNIPVVIMSSENVPSRINRSRSIISHDRKLMESDWINLRSRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKVKEDQNREEEESRTETELKSVQEEQEEIEFEMKSKKRKGGMEEEEEGEEEEEEEEEEGLEEEIRRRRRRRYSNNCVATAI 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28296386 28297984 - MELO3C009770.2.1 Cme04g02093 326354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02093 257 SMART REC_2 9 148 IPR001789 GO:0000160
Cme04g02093 257 MobiDBLite consensus disorder prediction 175 220 - -
Cme04g02093 257 Coils Coil 195 215 - -
Cme04g02093 257 Gene3D - 10 256 - -
Cme04g02093 257 Pfam Response regulator receiver domain 11 123 IPR001789 GO:0000160
Cme04g02093 257 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 3 250 - -
Cme04g02093 257 MobiDBLite consensus disorder prediction 175 243 - -
Cme04g02093 257 MobiDBLite consensus disorder prediction 221 236 - -
Cme04g02093 257 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 250 IPR045279 GO:0009736
Cme04g02093 257 SUPERFAMILY CheY-like 8 123 IPR011006 -
Cme04g02093 257 ProSiteProfiles Response regulatory domain profile. 10 174 IPR001789 GO:0000160
Cme04g02093 257 Coils Coil 218 246 - -
Cme04g02093 257 CDD REC_typeA_ARR 11 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02093 Cme08g01358 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02093 Cme-Chr4:28296386 Cme08g01358 Cme-Chr8:10713711 9.01E-74 dispersed
Cme04g02093 Cme-Chr4:28296386 Cme10g00486 Cme-Chr10:3124244 4.48E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41235 PF00072 Response_reg 2.40E-11 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02093 K14492 - csv:101220810 314.694