Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02110 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACGGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGATCTTACTAGAAATCCCTTGTATAATCAGATAAAGTCAAATAGTTCAACCCTGAACAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCAAACACTGCCATTACAGAAGGAGTCAAATCCAAATTTGGTTTCTACATCTGGTGGTCCTCGTGAAAACTGGGGAGAGTCTAATATGGCAGACACCAGCACAAGGACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACCTGCCGTATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCCGACCAGAAGACCTTGCGAAGGCTTGCTCAAAATCGTGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGATTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGGGACCAAGCTCATTCAATGAGTGGGAATGTTATTGAGTTATCCTATTCTCTATTCATCATGTTGAATATCACCGAAGAGAAAAATGCCTTGTGTTGTCTTGTTTTTGTTAATATCAACTCCTCCTTCAGTGGTAAGGAAAGGGACCACAAGGGTTTTCTTATGGCTTGCCGGGCTGTGGCATATAATGGGCTTGGCCCAATAGGATGCCCATGCATTCTTGGGTTCCTAGGGGCCCTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTTAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCCGAAATCCTAAAGACTTCGACTCTTGTTGAAAAGCAACCTCACTCAAATCTACAACCATGTTTGTTAATGCAGCTTCTTGTAAACCAGTTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATCTGCAACCTACAACAATTATCACAACAAGCAGAAGATGCTCTTTCACAAGGAATGGATGCATTGCAGCAATCGTTGGCCGAGACATTGGCCAGTGCCACCCCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCTTACGCCAGGCGGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGCCTTAGAGCCCTCAGTTCTCTGTGGCTAGCACGGCCACGAGATTGA 1668 44.6 MGSRTVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSTLNNNIQFGSLIKPLASTDVNLPTAVMGSQTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSPAVYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNVIELSYSLFIMLNITEEKNALCCLVFVNINSSFSGKERDHKGFLMACRAVAYNGLGPIGCPCILGFLGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKTSTLVEKQPHSNLQPCLLMQLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28463466 28472559 + MELO3C009753.2.1 Cme04g02110 326371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02110 555 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Cme04g02110 555 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700|GO:0006355
Cme04g02110 555 PANTHER TRANSCRIPTION FACTOR TGA9 314 555 - -
Cme04g02110 555 PANTHER TRANSCRIPTION FACTOR TGA9 60 246 - -
Cme04g02110 555 Pfam Seed dormancy control 333 404 IPR025422 GO:0006351|GO:0043565
Cme04g02110 555 SMART brlzneu 179 242 IPR004827 GO:0003700|GO:0006355
Cme04g02110 555 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Cme04g02110 555 MobiDBLite consensus disorder prediction 145 160 - -
Cme04g02110 555 Coils Coil 202 229 - -
Cme04g02110 555 MobiDBLite consensus disorder prediction 110 185 - -
Cme04g02110 555 Pfam bZIP transcription factor 182 223 IPR004827 GO:0003700|GO:0006355
Cme04g02110 555 CDD bZIP_HBP1b-like 183 234 - -
Cme04g02110 555 ProSiteProfiles DOG1 domain profile. 315 552 IPR025422 GO:0006351|GO:0043565
Cme04g02110 555 Gene3D - 182 234 - -
Cme04g02110 555 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 314 555 - -
Cme04g02110 555 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 60 246 - -
Cme04g02110 555 MobiDBLite consensus disorder prediction 110 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02110 Cme-Chr4:28463466 Cme10g00013 Cme-Chr10:143381 4.39E-47 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41236 PF14144 DOG1 2.60E-28 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02110 K14431 - csin:114258939 511.531