Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02112 | ATGGAAGATGAAGTGAGGAGGCTCTGGAAGAGCTGTGAGGCAAATCCTCGTATTGAAGAATGTATGGCTGCCATTGTTGCTTGGGGAAGGCTGAAGAATGTACCGGAAGCAGAGAGTATTTTTAATAGAGTTGTAAAAACATGGACGAAGCTATCCACAAGACACTATCATGCCATGCTGAAGGTTTATGGAGACAGTAAGATGCTGACAAAGGGCAAGGAACTAGTCAATCAGATGGCAGAGCGCGGTTGCCGCATGGATCCGTTGATATGTGATGCAGTTGTGAAGCTCTATGCGGAAGCAGGGGAGGTAGAAAAGGCAGACTCTTTCTTGGTTAAGGCTGTTCAACAATACGGGATGAAGCCATTGTTTACCTCATACATGACTCTCATGGATCACTACGCAAGGAGGGGTGATGTTCACAATGCAGAGAAAATCTTTCATAGGATGAGACAATCGGGTTTCATGGCTCGTTTCGGCCAATTTGGAACTCTAATACGAGCATATGTTAACGCCAAGACTACGGCCTATGGTATGAGAGAGAGAATGATGGCAGATAAAGTTTTTCCAAACAAAGCTTTGGCAGAACAATTAGCTCAAGTTGATCCTTTTAGAAAGACAGCGGTGTCAGATTTGCTCGACTGA | 645 | 44.65 | MEDEVRRLWKSCEANPRIEECMAAIVAWGRLKNVPEAESIFNRVVKTWTKLSTRHYHAMLKVYGDSKMLTKGKELVNQMAERGCRMDPLICDAVVKLYAEAGEVEKADSFLVKAVQQYGMKPLFTSYMTLMDHYARRGDVHNAEKIFHRMRQSGFMARFGQFGTLIRAYVNAKTTAYGMRERMMADKVFPNKALAEQLAQVDPFRKTAVSDLLD | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 28476211 | 28494629 | - | MELO3C030717.2.1 | Cme04g02112 | 326373 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02112 | 214 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 52 | 86 | IPR002885 | - | |
| Cme04g02112 | 214 | Pfam | Pentacotripeptide-repeat region of PRORP | 30 | 161 | IPR033443 | - | |
| Cme04g02112 | 214 | TIGRFAM | PPR: pentatricopeptide repeat domain | 126 | 155 | IPR002885 | - | |
| Cme04g02112 | 214 | TIGRFAM | PPR: pentatricopeptide repeat domain | 56 | 87 | IPR002885 | - | |
| Cme04g02112 | 214 | Gene3D | Tetratricopeptide repeat domain | 19 | 209 | IPR011990 | GO:0005515 | |
| Cme04g02112 | 214 | PANTHER | OS01G0280400 PROTEIN | 1 | 214 | - | - | |
| Cme04g02112 | 214 | PANTHER | OS12G0527900 PROTEIN | 1 | 214 | - | - | |
| Cme04g02112 | 214 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 87 | 122 | IPR002885 | - | |
| Cme04g02112 | 214 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 123 | 157 | IPR002885 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02112 | Cme-Chr4:28476211 | Cme04g01955 | Cme-Chr4:27189219 | 8.53E-06 | dispersed | |
| Cme04g02112 | Cme-Chr4:28476211 | Cme04g02116 | Cme-Chr4:28500887 | 1.75E-113 | proximal | |
| Cme04g02111 | Cme-Chr4:28475877 | Cme04g02112 | Cme-Chr4:28476211 | 7.62E-163 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02112 | - | - | csv:101218439 | 387.882 |