Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02121 ATGGGTTTGGGAATTATGGATCCGAACACCTGCATCAGGGGCTGCTGCTCCAGCAATTCGATTCCTCTTCATCTTCAACCTTCCGCATTCACGCTGCTCTCTCCAATTGCCCGAGGGGCCGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAGAAAAGTTGCTGTAAAGAAGCCTATATTGTCTACTTCTGAGGAATTGGATAAATTTCACAAGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAAGCATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATACTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGTTGAAGAATGGAATCCAAGTATCAATCAGGTGCTTATGATCACTCTAGAGTTAGCAAAGGCTTTGCAGTATTTGCACAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACGAAGATTTGCATCCATACTTGGCTGATTTTGGTTTAGCAATACACCAGAAGTATCTGAAAGAAGTTTCTGCTGAAAACTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATATATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGACGTCTATAGTTTTGGCATCCTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGTACTGAAGCACAGGCCCACACTGTACTGGAAATGAATTATACAGAGCAGATGCTTACGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCCCTTCCTAGTGATGAGTCAGGCACACCATCTAGGTTGTTATCACTTATACAGTGGTGCTGGGATGCAAATCCTAAAAACAGACCATCTTTTTCTGATATAGTTATGGACTTGGAGTCAATTTGGGAGAATAGAAAGAGTCTAGAATCTGTTTCTTCTGTACAACTTGATTTGTGTGGTAGGCTTAGTGATGCTAATGAACATGATTGTGCGTATCAAGAAGAAATTAACTGGTCAAATCAGGGAGAACGTTGTTCTCAAAAGTCTTCTGATGCAGATAGGTGTGGTTTGAATGAGTGGCTTGATTTCTCAACAGACCAATTGGCGTACCGCCCAACACTTTCTTGGGGATCATTCTCCACCTGTGGGATGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCCTCACTTCTGCAGTGATGAGGACATCCATGCCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCCGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCAAACATCATTTTCCACGAGAAGTCCTGCAAATGCATTAATGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAGCTCGAGTTCTTTCGCAAATCCAAGAAACTTAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGAGACAAGCTTTTTGCTGCCAATGCTGGTGATTGCAGGGCAATATTGTGTCGGGCTGGGGATCCCATTGTTTTAAGTAAGGATCATGTCGCTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAATGCTGGAGGGCAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTAACTCGATCAATTGGCGACGATGATCTGAAGCCAGCTGTGACTGCGGAACCTGAGATAACAGAAACTGTTTTGACATCACAGGATGATTGCCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGATATAATAAGAGATACCGTCAAAGATCCCGGAATGTGCTCAAAGCGACTCGCAACAGAAGCGGCAGCTCGGGGCAGCCGCGATAACATCACGGTAATTGTTGTATTTTTACATCCAGTATCTACAATAGAGAGAATTTATTAA 1968 43.6 MGLGIMDPNTCIRGCCSSNSIPLHLQPSAFTLLSPIARGAESTVYEGRLDGRKVAVKKPILSTSEELDKFHKELQLLCELDHPSIVKLVAANAKPPNYMFFFEYYESPNLAEKLHVEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVLLDEDLHPYLADFGLAIHQKYLKEVSAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQMLTAAIVSDGLRPALPSDESGTPSRLLSLIQWCWDANPKNRPSFSDIVMDLESIWENRKSLESVSSVQLDLCGRLSDANEHDCAYQEEINWSNQGERCSQKSSDADRCGLNEWLDFSTDQLAYRPTLSWGSFSTCGMRETMEDSHFLLPHFCSDEDIHAFGIFDGHRGAAAAEFSAQAIPGFLQTSFSTRSPANALMEAFVKTDIEFRKELEFFRKSKKLKQKDWHPGCTAVVALIVRDKLFAANAGDCRAILCRAGDPIVLSKDHVASCLEERERVINAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLTSQDDCLVMASDGLWDVLSNSEVVDIIRDTVKDPGMCSKRLATEAAARGSRDNITVIVVFLHPVSTIERIY 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28538023 28546766 - MELO3C009743.2.1 Cme04g02121 326382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02121 655 Gene3D Transferase(Phosphotransferase) domain 1 17 339 - -
Cme04g02121 655 CDD PP2Cc 390 645 IPR001932 -
Cme04g02121 655 Pfam Protein phosphatase 2C 392 638 IPR001932 -
Cme04g02121 655 PANTHER PROTEIN PHOSPHATASE 2C 1 655 IPR015655 GO:0004722|GO:0006470
Cme04g02121 655 SMART PP2C_SIG_2 403 645 IPR001932 -
Cme04g02121 655 Pfam Protein kinase domain 32 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02121 655 PANTHER - 1 655 - -
Cme04g02121 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cme04g02121 655 ProSiteProfiles PPM-type phosphatase domain profile. 388 645 IPR001932 -
Cme04g02121 655 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02121 655 SMART PP2C_4 378 643 IPR001932 -
Cme04g02121 655 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Cme04g02121 655 SUPERFAMILY PP2C-like 382 647 IPR036457 -
Cme04g02121 655 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02121 655 Gene3D - 378 650 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02121 Cme-Chr4:28538023 Cme07g00150 Cme-Chr7:961248 7.53E-50 dispersed
Cme04g02121 Cme-Chr4:28538023 Cme08g00296 Cme-Chr8:1888947 8.11E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64833 PF00069 Pkinase 2.40E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02121 - - csv:101217487 1268.45