Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02122 ATGGCAATTGACCAGGCCGAGCTTAGCACTGAGCAGGTTCTTACAAGGGACATTCCATGGGAGACATACATGTCTACTAAACTTATCAGTGGAACAAGCCTTCAGTTGTTAAGGCGTTATGATAACAGACCAGAAAGTTACAGGGCACAGCTGTTGGATGATGATGGTCCAGCATATGTTCGGGTATTTGTTAGCATTTTACGTGATATATTTAAGGAAGAAACAGTGGAATATGTTCTAGCATTAATCGATGAAATGCTTACAGCGAACCCAAAAAGAGCAAGATTGTTCCATGATCCTTCTCTTGCAAGTGAAGATGCTTATGAACCTTTCCTAAGATTGCTTTGGAAAGGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCGCTGATAGTGAGTGCTAGACCGAAAACTCATGATGGAAGTTTTGCAAATGATGATGCCTCGAACTCCAAGAACAAAAATACTACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCAACTCTGCTGAAGGAACCAAAGGTCAGATCCTCCTTCGTTCAGACAGATGGAGTGAAATTGCTTATTCCTTTGATTTCTCCTGCATCGACCCAACAATCTATTCAGCTTCTATACGAAACTTGTCTGTGTGTTTGGCTCTTGTCATATTATGAGCCGGCAATTGAATTCTTGGCCACCTCTAGGACCCTTCCAAGACTCATCGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTTGTCCGAGTTATTATTTTGACCTTGAGGAACCTACTCCACAAGGGGACATTTGGAGCTCAAATGGTGGGTCTTGGACTACCACAAATTGTTCAAAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTAGAAGAGGGGCTGAAAGATAACATCAAGAAACTAAGTTCTTTCGACAAGTATAAGCAAGAAGTCCTTCTTGGGCATCTTGACTGGTCTCCTATGCACAAAGATGTCAACTTCTGGCGAGAAAACATAATGAGCTTTGAAGAGAACGATTTGAAGATATTGAGGGTTCTAATCACAATTCTGGATAGTTCCAGTGATCCAAGGGCTTTGGCAGTTGCTTGTTTTGATCTTTCTCAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGATCTCAAGGCCAAAGAAAGAGTGATGAAACTGATGAATCATGAGAATGCTGAGGTTACCAAATATGCTCTCCTTTGCATTCAAAGGCTCTTTCTAGGTGCCAAGTATGCGAGCTTTCTACAGGCTTAA 1365 41.68 MAIDQAELSTEQVLTRDIPWETYMSTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDPSLASEDAYEPFLRLLWKGNWFIQEKSCKILALIVSARPKTHDGSFANDDASNSKNKNTTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQTDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEFLATSRTLPRLIDVVKSSTKEKVVRVIILTLRNLLHKGTFGAQMVGLGLPQIVQSLKSQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENIMSFEENDLKILRVLITILDSSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHENAEVTKYALLCIQRLFLGAKYASFLQA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28547408 28555384 + MELO3C009742.2.1 Cme04g02122 326383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02122 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
Cme04g02122 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 3 454 - -
Cme04g02122 454 CDD VATPase_H 4 448 - -
Cme04g02122 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221|GO:1902600
Cme04g02122 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037
Cme04g02122 454 Gene3D - 6 333 IPR011989 -
Cme04g02122 454 Gene3D - 345 446 IPR038497 -
Cme04g02122 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 3 454 IPR004908 GO:0000221|GO:0046961|GO:1902600
Cme04g02122 454 Pfam V-ATPase subunit H 6 325 IPR004908 GO:0000221|GO:0046961|GO:1902600
Cme04g02122 454 PIRSF V-ATP_synth_H 2 453 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01975 Cme-Chr2:26050770 Cme04g02122 Cme-Chr4:28547408 1.04E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02122 K02144 - csv:101217015 889.026