Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02123 ATGCTTCTCTCTCTACTCCCTCTCTCTTTTCTCCTCCTTCTCCTCCTCTACAAACTCTACCACCGTCTCCGCTTCAACCTTCCTCCAGGCCCACGCCCGCTTCCCGTCGTCGGTAACCTATACGACGTCAAACCTGTCCGCTTCAGATGCTACGCGGACTGGGCCAAGCAGTACGGTCCCATCATATCGGTGTGGTTCGGCTCCACCTTGAACGTGGTTGTCTCCAACACGGAGTTAGCGAGGGAGGTTCTGAAGGAGCACGACCAGAGCCTGGCGGACCGCCACCGGACCAGATCGGCCGCGAAATTTAGCCGGGACGGGAAGGATTTGATTTGGGCGGATTATGGACCGCATTATGTGAAGGTTAGGAAAGTTTGTACCATTGAACTCTTCTCTCCCAAACGACTTGAATCTTTGAGGCCGATTCGAGAAGATGAAGTTTCCGCCATGGTTGAAGATGTTTTCAACCATTGCACTAATCCTGAGAACTATGGAAAGAGTTTGAAGCTTCGGGAATTTCTGGGAGCAGTTTCATTCAACAACATCACAAGGCTTGCTTTTGGGAAGAGATTTGTGAACTCCAATGGCGTTTTGGACGAACAGGGCTTGGAATTCAAGGCTATTGTCGCCAATGGCCTCAAGCTCGGCGCCTCCCTTGCCATGGCTGAGCACATTCCTTGGCTCCGTTGGATGTTCCCTCTCGAAGAAGAAGCCTTCGCCAAGCATGGCGCCCGTCGCGACCGCCTCACTCGGGCTATCATGGATGAGCATACCAAAGCTCGCACCTTGAGCGGTAATGTCAAGAATCACTTCGTTGATGCTCTCCTCACTCTCAAAGACAAGTATGATCTCAGCGAAGATACTATCATTGGCCTCCTTTGGGATATGATCACAGCCGGCATGGACACGACAGCGATTTCAGTGGAATGGGCAATGGCGGAGATCGTAAGAAACCCTAGAGTTCAGAAGAAAGTACAGGAAGAACTAGACAAAGTGATTGGAGTAGATCGAATCATGACAGAGAACGATTTCTCAAATCTTCCATATCTTCAATGCGTCGTAAAAGAGGCAATGAGATTACATCCACCGACGCCATTGATGCTGCCACACCGATCCAACGCCAACGTCAAGATCGGCGGGTACGACATCCCCAAAGGCTCAAACGTGCACGTTAACGTCTGGGCAGTAGCACGTGACCCAGCAGTATGGAAGAACCCGGAGGAATTCCGGCCGGAGCGATTCCTAGAAGAGGATGTAGACATGAAAGGACACGATCTCCGACTGCTGCCGTTCGGAGCAGGGCGGAGGGTTTGTCCAGGGGCTCAATTGGGGATCAATTTGGTGACATCCATGTTGGGGCATCTACTTCATCACTTTGAATGGACGCCGGCGCCGGGGATGAAGGGGGAGGAGATGGACATGACAGAGAGCCCTGGATTGGTGTCGTACATGAAAACGCCGGTGGAGGCTGTGGCCACTCCAAGGCTGGATTCTAGATTGTACAAACGTGTGGCTGTGGACATGTAA 1527 52.0 MLLSLLPLSFLLLLLLYKLYHRLRFNLPPGPRPLPVVGNLYDVKPVRFRCYADWAKQYGPIISVWFGSTLNVVVSNTELAREVLKEHDQSLADRHRTRSAAKFSRDGKDLIWADYGPHYVKVRKVCTIELFSPKRLESLRPIREDEVSAMVEDVFNHCTNPENYGKSLKLREFLGAVSFNNITRLAFGKRFVNSNGVLDEQGLEFKAIVANGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDRLTRAIMDEHTKARTLSGNVKNHFVDALLTLKDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAEIVRNPRVQKKVQEELDKVIGVDRIMTENDFSNLPYLQCVVKEAMRLHPPTPLMLPHRSNANVKIGGYDIPKGSNVHVNVWAVARDPAVWKNPEEFRPERFLEEDVDMKGHDLRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFEWTPAPGMKGEEMDMTESPGLVSYMKTPVEAVATPRLDSRLYKRVAVDM 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28556816 28560240 - MELO3C009741.2.1 Cme04g02123 326384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02123 508 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 Pfam Cytochrome P450 28 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 Gene3D Cytochrome P450 21 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Cme04g02123 508 PANTHER CYTOCHROME P450 98A3 5 501 - -
Cme04g02123 508 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 501 - -
Cme04g02123 508 SUPERFAMILY Cytochrome P450 28 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g02123 508 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02123 Cme-Chr4:28556816 Cme04g01347 Cme-Chr4:18993933 2.28E-125 dispersed
Cme07g00393 Cme-Chr7:2552204 Cme04g02123 Cme-Chr4:28556816 2.21E-61 dispersed
Cme12g00007 Cme-Chr12:134366 Cme04g02123 Cme-Chr4:28556816 1.10E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02123 K09754 - csv:101217257 932.554