Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02132 ATGAAAGAAGATGATTCGAATTGGTTCTCCAAATGGGAACAAGAACTTCCTTCTCCTGATGAATTAATGCCTCTTTCTCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGACATCACTAACTCAAATCCTCTTAACGATTCTCATCCTCCGCCGCCTCCACCGCCCCCTCCGGTTATCATTCAGCCGAGTTCTGCAGATTTTGCTGATTCGGGGGATTTGGGTTCTGGTGCTGGCGACGAACCTGCGAGAACTCTTAAACGTCCACGCCTTGTGTGGACTCCACAGCTTCATAAGCGATTTGTCGACGCTGTTGCTCATTTGGGGATCAAAAATGCCGTCCCTAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTGACTCGTGAGAACGTAGCTAGTCATTTGCAGAAATACCGGCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGTGGAGCTAACGGCGGTGCTGGATTGGTTTCACCCGCTTCAGATCCCGCCACCGACCATTTGTTTGCGAGTTCCCCTGTTCCACCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCGTCGGAGCTCTGCAGCATCACCACCACCAGATGGCGGCAGCTGCCGCTGCCGCTCAGTACCATCGACAAGTAGCTCATTTTGGGTCGTCGCCGCCGACGAATGGGCAATTTGAGAATACGTTTTTGGCTCGCCCTGTTCATCGGGTTGGAGCGCCAGTGAGTACTCCGGTGACGAATTATAGCGAGGATTTGGATTCGGGGAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACTGGAAATGATTAA 861 50.75 MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPLNDSHPPPPPPPPPVIIQPSSADFADSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSPASDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNGQFENTFLARPVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28625333 28626665 + MELO3C009733.2.1 Cme04g02132 326393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02132 286 MobiDBLite consensus disorder prediction 255 276 - -
Cme04g02132 286 SUPERFAMILY Homeodomain-like 86 146 IPR009057 -
Cme04g02132 286 MobiDBLite consensus disorder prediction 40 88 - -
Cme04g02132 286 Gene3D - 86 148 - -
Cme04g02132 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 145 IPR017930 -
Cme04g02132 286 Pfam Myb-like DNA-binding domain 93 141 IPR001005 -
Cme04g02132 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Cme04g02132 286 MobiDBLite consensus disorder prediction 47 63 - -
Cme04g02132 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 286 IPR044841 GO:0003700|GO:0006355
Cme04g02132 286 MobiDBLite consensus disorder prediction 1 23 - -
Cme04g02132 286 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02132 Cme-Chr4:28625333 Cme08g01427 Cme-Chr8:12670609 2.62E-122 dispersed
Cme04g02132 Cme-Chr4:28625333 Cme12g00152 Cme-Chr12:1499830 4.79E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41238 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02132 - - csv:101216059 505.753