Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02132 | ATGAAAGAAGATGATTCGAATTGGTTCTCCAAATGGGAACAAGAACTTCCTTCTCCTGATGAATTAATGCCTCTTTCTCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGACATCACTAACTCAAATCCTCTTAACGATTCTCATCCTCCGCCGCCTCCACCGCCCCCTCCGGTTATCATTCAGCCGAGTTCTGCAGATTTTGCTGATTCGGGGGATTTGGGTTCTGGTGCTGGCGACGAACCTGCGAGAACTCTTAAACGTCCACGCCTTGTGTGGACTCCACAGCTTCATAAGCGATTTGTCGACGCTGTTGCTCATTTGGGGATCAAAAATGCCGTCCCTAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTGACTCGTGAGAACGTAGCTAGTCATTTGCAGAAATACCGGCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGTGGAGCTAACGGCGGTGCTGGATTGGTTTCACCCGCTTCAGATCCCGCCACCGACCATTTGTTTGCGAGTTCCCCTGTTCCACCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCGTCGGAGCTCTGCAGCATCACCACCACCAGATGGCGGCAGCTGCCGCTGCCGCTCAGTACCATCGACAAGTAGCTCATTTTGGGTCGTCGCCGCCGACGAATGGGCAATTTGAGAATACGTTTTTGGCTCGCCCTGTTCATCGGGTTGGAGCGCCAGTGAGTACTCCGGTGACGAATTATAGCGAGGATTTGGATTCGGGGAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACTGGAAATGATTAA | 861 | 50.75 | MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPLNDSHPPPPPPPPPVIIQPSSADFADSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSPASDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNGQFENTFLARPVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28625333 | 28626665 | + | MELO3C009733.2.1 | Cme04g02132 | 326393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02132 | 286 | MobiDBLite | consensus disorder prediction | 255 | 276 | - | - | |
Cme04g02132 | 286 | SUPERFAMILY | Homeodomain-like | 86 | 146 | IPR009057 | - | |
Cme04g02132 | 286 | MobiDBLite | consensus disorder prediction | 40 | 88 | - | - | |
Cme04g02132 | 286 | Gene3D | - | 86 | 148 | - | - | |
Cme04g02132 | 286 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 94 | 145 | IPR017930 | - | |
Cme04g02132 | 286 | Pfam | Myb-like DNA-binding domain | 93 | 141 | IPR001005 | - | |
Cme04g02132 | 286 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 90 | 142 | IPR006447 | GO:0003677 | |
Cme04g02132 | 286 | MobiDBLite | consensus disorder prediction | 47 | 63 | - | - | |
Cme04g02132 | 286 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 286 | IPR044841 | GO:0003700|GO:0006355 | |
Cme04g02132 | 286 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cme04g02132 | 286 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 286 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02132 | Cme-Chr4:28625333 | Cme08g01427 | Cme-Chr8:12670609 | 2.62E-122 | dispersed | |
Cme04g02132 | Cme-Chr4:28625333 | Cme12g00152 | Cme-Chr12:1499830 | 4.79E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41238 | PF00249 | Myb_DNA-binding | 2.00E-08 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02132 | - | - | csv:101216059 | 505.753 |