Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02153 ATGGAGGTTTTACAGGCACTTGATTCTCAGGTTCTCATTGGTTTAGTAGCGGCGTTGGTTGCCATTGTTGTTGGTGCTGTTTTCCTGTTTTCCTCGAGGAAACCCGCATCCAGAGCCTGCTTGGATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTGAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGACCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGGAAGGATAGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCTACTACTTTGGATTCGGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGTATGGGGGACTCTCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTAGTGCATTTGGGATGCTTGCTGGGGGCTCTGGCATTACACCTATGTACCAAGTTTCTCGCGCTATATTAGAGAACCCAGAGGACAAGACAAAGGTTCACCTTATTTACGCCAATGTTACTCTAGAAGATATTCTGTTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGTTTCAAGATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTATCTAAGGAAATGATTAAAGCACATTGCCCTGCACCAGCTGCTGACATTAAGATTCTACGATGCGGTCCGCCACCGATGAACAAGGCCATGGGCGAGCACCTTGACGCTCTTGGATATTCACCTGAAATGCAGTTTCAATTCTAA 843 44.84 MEVLQALDSQVLIGLVAALVAIVVGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHNVAKFTFILPKTDSILGLPIGQHLSCRGKDSQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRMGDSLAVKGPKGRFKYQPGQVSAFGMLAGGSGITPMYQVSRAILENPEDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGEHLDALGYSPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28819749 28824245 + MELO3C009710.2.1 Cme04g02153 326414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02153 280 CDD cyt_b5_reduct_like 49 280 - -
Cme04g02153 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cme04g02153 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491
Cme04g02153 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cme04g02153 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cme04g02153 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cme04g02153 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cme04g02153 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cme04g02153 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cme04g02153 280 Gene3D Translation factors 36 137 - -
Cme04g02153 280 Gene3D - 138 280 IPR039261 -
Cme04g02153 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491
Cme04g02153 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491
Cme04g02153 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491
Cme04g02153 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 IPR001834 GO:0016491
Cme04g02153 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 276 IPR039261 -
Cme04g02153 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491
Cme04g02153 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cme04g02153 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02153 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212931 533.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme04g02153 Cme08g01481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02153 Cme-Chr4:28819749 Cme08g01481 Cme-Chr8:13612767 1.18E-161 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02153 Cme_Chr04 FPKM 3.506063 3.495713 0.321207 0.309337 1.041064 0.8859 0.953106 0.02063 0.0 0.018858