Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02188 ATGGAAAATCATGGTGATGACCCTAATAGTCCAAATCACGGCTGTGAGAGAGCGGAGCCGGTGAGATCACGGTGGACTCCCAAGCCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTTAATCCTCCTAAAGATGAGACTGTTAGAATAAGAAAGCTTCTTGAAAAATTTGGTTCTGTTGGGGATGCTAATGTTTTTTACTGGTTTCAAAACCGTCGCTCTCGCTCTCGCCGTCGCCAACGTCAGCTACAAGCCGCCGCTACTCACCAAGGTAGCAGCAGTGCAATTCACTACGATTGTGGTAACGTCAGCAGTGGCGGTTACAACGGTGGAAGTGGTGGTATTATGAATTTTGCTGGGGTTTCCTCTTCTTATATCGGAGGAGGGTCCTCTTCTTCATCCTCCTCCGCTTCTGGGGTTGGAGGAGATTGTAGCGGTGGCAGTGGCGGGAGCAGTGGTTTTTCGATGTCGGGTCATATGGGTTTCTCAGAAGTTGATCAACAAATGGTTGTGACAAGTACTCCATCGTTTTGCCCTTCGGAAACCTCAAATTTAGAGTTTCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTACCAAAAGGAGCAGTGGATATGAAAGCAATGTTTGGGGAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTCCACACTTTACAGCATGGTGAAAGCTATTTTCTGGATGTTATTAAGAGAGGGTGGGAAGTAGATGCGTAG 792 45.08 MENHGDDPNSPNHGCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGSSSAIHYDCGNVSSGGYNGGSGGIMNFAGVSSSYIGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSETSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQHGESYFLDVIKRGWEVDA 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29130753 29132946 - MELO3C009677.2.1 Cme04g02188 326449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02188 263 MobiDBLite consensus disorder prediction 1 24 - -
Cme04g02188 263 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Cme04g02188 263 SMART HOX_1 20 87 IPR001356 GO:0003677
Cme04g02188 263 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Cme04g02188 263 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Cme04g02188 263 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 252 IPR044558 GO:0003700|GO:0048830
Cme04g02188 263 Gene3D - 22 89 - -
Cme04g02188 263 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02188 - - - csv:101207317 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02188 Cme-Chr4:29130753 Cme08g00256 Cme-Chr8:1665495 6.16E-14 dispersed
Cme04g02188 Cme-Chr4:29130753 Cme12g01833 Cme-Chr12:24715249 2.54E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41244 PF00046 Homeodomain 6.90E-13 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02188 Cme_Chr04 FPKM 149.427795 138.946289 121.377045 115.121262 44.205956 40.94212 44.74609 124.199997 128.457153 139.141174