Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02188 ATGGAAAATCATGGTGATGACCCTAATAGTCCAAATCACGGCTGTGAGAGAGCGGAGCCGGTGAGATCACGGTGGACTCCCAAGCCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTTAATCCTCCTAAAGATGAGACTGTTAGAATAAGAAAGCTTCTTGAAAAATTTGGTTCTGTTGGGGATGCTAATGTTTTTTACTGGTTTCAAAACCGTCGCTCTCGCTCTCGCCGTCGCCAACGTCAGCTACAAGCCGCCGCTACTCACCAAGGTAGCAGCAGTGCAATTCACTACGATTGTGGTAACGTCAGCAGTGGCGGTTACAACGGTGGAAGTGGTGGTATTATGAATTTTGCTGGGGTTTCCTCTTCTTATATCGGAGGAGGGTCCTCTTCTTCATCCTCCTCCGCTTCTGGGGTTGGAGGAGATTGTAGCGGTGGCAGTGGCGGGAGCAGTGGTTTTTCGATGTCGGGTCATATGGGTTTCTCAGAAGTTGATCAACAAATGGTTGTGACAAGTACTCCATCGTTTTGCCCTTCGGAAACCTCAAATTTAGAGTTTCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTACCAAAAGGAGCAGTGGATATGAAAGCAATGTTTGGGGAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTCCACACTTTACAGCATGGTGAAAGCTATTTTCTGGATGTTATTAAGAGAGGGTGGGAAGTAGATGCGTAG 792 45.08 MENHGDDPNSPNHGCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGSSSAIHYDCGNVSSGGYNGGSGGIMNFAGVSSSYIGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSETSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQHGESYFLDVIKRGWEVDA 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29130753 29132946 - MELO3C009677.2.1 Cme04g02188 326449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02188 263 MobiDBLite consensus disorder prediction 1 24 - -
Cme04g02188 263 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Cme04g02188 263 SMART HOX_1 20 87 IPR001356 GO:0003677
Cme04g02188 263 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Cme04g02188 263 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Cme04g02188 263 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 252 IPR044558 GO:0003700|GO:0048830
Cme04g02188 263 Gene3D - 22 89 - -
Cme04g02188 263 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02188 Cme-Chr4:29130753 Cme08g00256 Cme-Chr8:1665495 6.16E-14 dispersed
Cme04g02188 Cme-Chr4:29130753 Cme12g01833 Cme-Chr12:24715249 2.54E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41244 PF00046 Homeodomain 6.90E-13 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02188 - - csv:101207317 410.994