Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02194 ATGAATAACTTAACTGTTGAAACGGAAGATGTATTTTCCAGCTTGCTTGAGCTTGCCGCTAATGATGACATTGATGCCTTCAAGAGATCGATTGAGCGCGACCCATCTGGTATTGATGAAATTGGGTTATGGTATGGTCGCCTACGTGGTTCGAAGCAAATGACTAACGAGCAGAGAACACCTTTAATGGTTGCTGCTACGTATGGTAGCACTGAAGTTTTGAAGCTTATTCTTTCTCTCTCTTGTGCTGATGTAAATCGCGCTGTTGGACTTGATAGAAGCACTGCACTTCACTGTGCAGCCTCTGGTGGGGCTGCAAATGCTGTAGATATCGTGAAGCGGCTCTTAGCCGCGGGTGCTGATCCTAATATGGTTGATGAGAATGGACATCGACCTGTTGATGTGATTGTTGCCCCCTTAAGGCATGGCGAGCTTAAATCAACCCTTGCAGAACTTCTTAAGACGAATGGTTTTTCTGGCGAAGGAAATCTTGATGTTGTAACAGGAGGTAGAGATTTGCATTCTTCTCGCCCTTCATCTCCTCTGAATGTGCCCTGTTCATCGGAGTTAGTTTCTTCTCCAACAAAATCAAAACTAAGTGATTTTCCAATGTATTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCTACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGGCCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCTTTTGTCCATCCCGGAGAAAATGCTAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCGTGTCCTGATTTTCGGAAGGGCGCTTGCAGACGGGGAGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGTTGGTTGCATCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCGAGACGAGTCTGCTTTTTTGCACACACAACTGACGAATTGCGCCCTCTGTATGTATCGACTGGCTCTGCTGTTCCCTCACCTCGTTCTTGTACTTCTGGGGCTTCTGCCATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCATTCACTCCTCCAATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCTGTGCCTTGGCCCCAACCGAACGTACCTGCCTTACATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATGCCTGTAGAGGACTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTCCTTAATGACTTGAATTGTCTTTCTCAACCACCGCTGAGTTCAAATTCATTGAACCGTTCTGGTCGGATGAAAACTATGACCCCCTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAATCTCTGGCTTCTGCTGTTTTTTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTATCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCGGTGGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAACAGTTTCGCAGCCTCAGTTCGCGTGAACTCGGTGCCAATTCTCCCTCTATTGTTGGTTCCCCTGCAAATTCTTGGTCCAAATGGGGACATTCTAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAACTTCGGCGATCGTCTTCTTTTGAGCTTGGGAACAATGGAGAAGAGCCGGATTTATCGTGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGTCGATAGTTTTGTATCATCTGGCGAGAGTTCTAACATGAACTCACAAATGGAGTCAGTTGATCATGCTGCATTAGGAGCCTGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCTCAACAGCACTGA 2106 45.54 MNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDENGHRPVDVIVAPLRHGELKSTLAELLKTNGFSGEGNLDVVTGGRDLHSSRPSSPLNVPCSSELVSSPTKSKLSDFPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTDELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVPWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRMKTMTPSNLDDLFSAESSSPRYSDQSLASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSPSIVGSPANSWSKWGHSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGVDSFVSSGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQH 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29184502 29188900 + MELO3C009671.2.1 Cme04g02194 326455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02194 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Cme04g02194 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Cme04g02194 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Cme04g02194 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Cme04g02194 701 SUPERFAMILY Ankyrin repeat 6 137 IPR036770 -
Cme04g02194 701 MobiDBLite consensus disorder prediction 646 673 - -
Cme04g02194 701 Gene3D - 271 334 - -
Cme04g02194 701 MobiDBLite consensus disorder prediction 575 600 - -
Cme04g02194 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 127 - -
Cme04g02194 701 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Cme04g02194 701 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515
Cme04g02194 701 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Cme04g02194 701 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Cme04g02194 701 MobiDBLite consensus disorder prediction 659 673 - -
Cme04g02194 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 698 - -
Cme04g02194 701 PANTHER UNKEMPT FAMILY MEMBER 1 698 IPR045234 -
Cme04g02194 701 Gene3D - 9 150 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00304 Cme-Chr1:2271097 Cme04g02194 Cme-Chr4:29184502 2.99E-55 dispersed
Cme03g02135 Cme-Chr3:28568077 Cme04g02194 Cme-Chr4:29184502 1.46E-45 dispersed
Cme04g01644 Cme-Chr4:23708827 Cme04g02194 Cme-Chr4:29184502 0 dispersed
Cme04g02194 Cme-Chr4:29184502 Cme11g01387 Cme-Chr11:20650326 5.27E-163 dispersed
Cme04g02194 Cme-Chr4:29184502 Cme02g00207 Cme-Chr2:1614273 4.27E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41245 PF12796 Ank_2 2.00E-09 CL0465 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02194 - - csv:101207646 1352.42