Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02208 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCAACCACTACCAGTTTCCACCCTTCTTCTTCTTCTTCTTCAGACCCTCTTCTTCCTCCTCCTCTACCTCAGCCTAATTTCTTCCCCACTTTCCACCACGCGCCGCCGCCACCACCATCATCACCGCCGCTCCGCCAAGCTCTCCCTCTCCTTAGGCTAAGCCCCACGAGATCATCATCACAAGAAAAAAACAACAACATTAAGGAATTAGATGACGAAAAGGAGGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCTCTAGAGATCAAGAAATAGAAGATGAAGAAGAAGAAGATCAAGAAATAGAATATGAAGAAGAAGAAGAATTAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGGTTATGTTTGAGTAATAGTAGACTTAATAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGCTAAGGCTGCCATGTTATTGCTGTTCACCAGGTTGTCGCAACAACATTGACCATCCAAGAGCAAAGCCATTAAAAGACTTTAGAACACTTCAAACTCATTATAAACGCAAGCATGGAATCAAGCCTTTTATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAAAGATCACTTAAAGACCATATCAAAGCCTTTGGTAATGGTCATGCTGCTTATAATCATAGTAGTAATAATAATAATAATAATAATCCTGATCTTCATCTTCATCGTCTTCATCATCGACGTCAACGGTTCGATAACGAAGAGGATGATCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1068 40.17 MDDPSTNFFFTNLFKFNSPTTTSFHPSSSSSSDPLLPPPLPQPNFFPTFHHAPPPPPSSPPLRQALPLLRLSPTRSSSQEKNNNIKELDDEKEETLMRVALHIGLPSSRDQEIEDEEEEDQEIEYEEEEELEELEEEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSSNNNNNNNPDLHLHRLHHRRQRFDNEEDDHAYSEVEQDHD 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29302073 29304868 + MELO3C009657.2.1 Cme04g02208 326469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02208 355 MobiDBLite consensus disorder prediction 32 63 - -
Cme04g02208 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Cme04g02208 355 SUPERFAMILY beta-beta-alpha zinc fingers 170 196 IPR036236 -
Cme04g02208 355 PANTHER ZINC FINGER PROTEIN WIP2 1 350 - -
Cme04g02208 355 Gene3D Classic Zinc Finger 173 196 - -
Cme04g02208 355 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Cme04g02208 355 Coils Coil 113 144 - -
Cme04g02208 355 MobiDBLite consensus disorder prediction 111 125 - -
Cme04g02208 355 SUPERFAMILY beta-beta-alpha zinc fingers 240 278 IPR036236 -
Cme04g02208 355 SMART c2h2final6 174 196 IPR013087 -
Cme04g02208 355 SMART c2h2final6 258 278 IPR013087 -
Cme04g02208 355 PANTHER ZINC FINGER PROTEIN WIP2 1 350 IPR043584 GO:0003700|GO:0010468
Cme04g02208 355 MobiDBLite consensus disorder prediction 106 125 - -
Cme04g02208 355 Coils Coil 78 98 - -
Cme04g02208 355 MobiDBLite consensus disorder prediction 20 92 - -
Cme04g02208 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 278 IPR013087 -
Cme04g02208 355 Gene3D Classic Zinc Finger 236 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02208 Cme-Chr4:29302073 Cme05g00148 Cme-Chr5:1007240 2.13E-87 dispersed
Cme05g00149 Cme-Chr5:1009691 Cme04g02208 Cme-Chr4:29302073 7.31E-22 transposed
Cme08g01721 Cme-Chr8:19518035 Cme04g02208 Cme-Chr4:29302073 1.12E-125 transposed
Cme09g00789 Cme-Chr9:9715712 Cme04g02208 Cme-Chr4:29302073 1.19E-97 transposed
Cme12g00615 Cme-Chr12:11101277 Cme04g02208 Cme-Chr4:29302073 1.56E-102 transposed
Cme01g02478 Cme-Chr1:32921653 Cme04g02208 Cme-Chr4:29302073 3.05E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41247 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02208 - - csv:101208110 568.155