Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02213 | ATGGAGATTAAAGTAGGGACTGTAGGTGGATCCAGTACAATCGGGCGTCAATCGGATGATACTGGACTTGAATCGCTTCAATTCTGTGAAGAAATTCAGGGGTTGATGACTATTCCGGCGGAAAATGCTAGCTCCTTCACCGCACTTCTGGAACTCCCGGCGACGCAGGCTTTAGAGCTACTTCACTCGCCGGATTCCGCGGCGGCGGCGGTTGTGAACGATGATTCCGTTCATCACTGTATCAAAGACGTTCCGAAACCCTACTTTAGTGCCTTCAACTGCAATTTGACCTTTCCGACGAACTCGGGTCTAATTGAACGTGTTACCAAGCTCTCGATTTTGGCTAAAGAGCATTCGCCGGAGACGACAAGCTCAGTGCCGTTGAATTCGAGTGTGAATTTTGAGAAGGTGAAGAACGAGCCCACAACTGACACCGATTCGAACCCTAATCCCTTGCAGACTTTAATCTCCGATCCGAAGGTGGAGAACACGAACCAGAGATCGGCGAAGAGGAAGGAACGCGAGAAAAAGGGAAGAGGGTCAACAAAGAAGAGCAAGAATGAAAGCAACGAGGATGCAGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGCCTAGCAGAGCGAGCAAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGCACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGGTCAGAATCTAA | 798 | 49.0 | MEIKVGTVGGSSTIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSAAAAVVNDDSVHHCIKDVPKPYFSAFNCNLTFPTNSGLIERVTKLSILAKEHSPETTSSVPLNSSVNFEKVKNEPTTDTDSNPNPLQTLISDPKVENTNQRSAKRKEREKKGRGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEVRI | 265 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 29332493 | 29337790 | - | MELO3C009653.2.1 | Cme04g02213 | 326474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02213 | 265 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 205 | 263 | IPR036638 | GO:0046983 | |
| Cme04g02213 | 265 | SMART | finulus | 213 | 263 | IPR011598 | GO:0046983 | |
| Cme04g02213 | 265 | MobiDBLite | consensus disorder prediction | 180 | 195 | - | - | |
| Cme04g02213 | 265 | MobiDBLite | consensus disorder prediction | 138 | 195 | - | - | |
| Cme04g02213 | 265 | MobiDBLite | consensus disorder prediction | 138 | 163 | - | - | |
| Cme04g02213 | 265 | Pfam | Helix-loop-helix DNA-binding domain | 211 | 258 | IPR011598 | GO:0046983 | |
| Cme04g02213 | 265 | Gene3D | - | 204 | 264 | IPR036638 | GO:0046983 | |
| Cme04g02213 | 265 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 207 | 257 | IPR011598 | GO:0046983 | |
| Cme04g02213 | 265 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 17 | 262 | IPR024097 | GO:0006355 | |
| Cme04g02213 | 265 | PANTHER | TRANSCRIPTION FACTOR BHLH60 | 17 | 262 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02213 | Cme-Chr4:29332493 | Cme06g00870 | Cme-Chr6:5978443 | 3.46E-33 | dispersed | |
| Cme04g02213 | Cme-Chr4:29332493 | Cme07g00258 | Cme-Chr7:1678327 | 2.34E-34 | transposed | |
| Cme04g02213 | Cme-Chr4:29332493 | Cme11g00114 | Cme-Chr11:1054206 | 1.32E-34 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41248 | PF00010 | HLH | 8.60E-06 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02213 | - | - | csv:101205014 | 489.189 |