Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02220 ATGGCTTCTTCCAATATTAAAAACAGCTCCATCATCATCCAACAACAAGAAGAAGAAGAAAAACAACAACTTCATCATCATCATCAACAACAACAACAACAACCTCAATTTCTTCAAAATCCAAGCTTTGTCATACCATCAAACTCAAAAAATTCCTCATTATTCAATTTCCAAAACCCCAACTTCTCTGATCATCATCAACACCACCATCATCATCATCAATTGCCTTTCTCCATGAATCTCCCTTCCATCTCTTCAAACTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGAGAATTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTTCAACCACTACTCAAGACCAAAGACAGAGTTCGGGTATGAGACCTCCGACGTTGAATATCTTCCCGTCGCAGCCGATGCATGTCGACTCATTACCAATAAAAGGAAATACAACATTGATAAACCATGGTGGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCAATGGAGGAGCCATTGCATCTGCTCCAGCTCCAACCCAAACTACAACTACAACCGAACCTCATCCCAAACCTCCTAAACGTGATCCAAGCAAAAAAGGGCTCACCTCAAGTTCCGAGCAAGAAGGACCCAAAACTCCGGACCCTAAGACCTTAAGAAGATTAGCTCAAAATCGAGAAGCTGCTAGAAAAAGCAGGCTGAGAAAAAAGGCATATGTTCAGCAATTAGAGATGAGTAGGATTAAGCTGACGCAGCTGGAACAAGAGCTACAAAGAGCAAGAAATCAGGGCATGTTTTTGGGTGGAGGAGCCGCCATTTTAGGAGGACCTGACCAAGGACTTCCCTCCGGCTTCCATAACCTCAGCTCCGATGCTGCGGTGTTTGACATTGAGTACGGGAGGTGGCAAGAGGAACACCACCGGTTGATGTGCGAGCTACGAGCAGCGGTGCAAGAGCACCTACCGGAGAACGAGCTGCGGTTGTACGTTGACAGCTGCCTAGCCCATTACGATGAGGTTTTGAACTTGAAGATGATGGTGGCTAAATCGGACATATTTCACCTTGTGTCCGGCATGTGGAAGACTCCGGCGGAGAGATGCTTCATGTGGATGGGCGATTTTAGACCCTCTGAGCTCATTAAGATAATAATGGGTCAAATAGAGCCATTAACAGAACATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAAAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAATCATTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCAAATATGGCTAACTATATGGGCCAAATGACATTAGCCATCAATAAGCTCTCTACTCTTGAAGGCTTTGTAAGACAGTTATGTGTGGGGGTTTTTTAA 1431 43.96 MASSNIKNSSIIIQQQEEEEKQQLHHHHQQQQQQPQFLQNPSFVIPSNSKNSSLFNFQNPNFSDHHQHHHHHHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSSTTTQDQRQSSGMRPPTLNIFPSQPMHVDSLPIKGNTTLINHGGDSKIKASEPSKELANQRSNGGAIASAPAPTQTTTTTEPHPKPPKRDPSKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARNQGMFLGGGAAILGGPDQGLPSGFHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLYVDSCLAHYDEVLNLKMMVAKSDIFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQIEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQLCVGVF 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29379807 29385293 - MELO3C009647.2.1 Cme04g02220 326481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02220 476 Pfam Seed dormancy control 319 393 IPR025422 GO:0006351|GO:0043565
Cme04g02220 476 MobiDBLite consensus disorder prediction 170 197 - -
Cme04g02220 476 MobiDBLite consensus disorder prediction 145 159 - -
Cme04g02220 476 CDD bZIP_HBP1b-like 226 275 - -
Cme04g02220 476 Coils Coil 245 272 - -
Cme04g02220 476 MobiDBLite consensus disorder prediction 41 78 - -
Cme04g02220 476 SUPERFAMILY Leucine zipper domain 226 269 IPR046347 GO:0003700|GO:0006355
Cme04g02220 476 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 99 470 - -
Cme04g02220 476 PANTHER TRANSCRIPTION FACTOR TGA9 99 470 - -
Cme04g02220 476 SMART brlzneu 222 285 IPR004827 GO:0003700|GO:0006355
Cme04g02220 476 Pfam Basic region leucine zipper 223 268 IPR004827 GO:0003700|GO:0006355
Cme04g02220 476 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 229 244 IPR004827 GO:0003700|GO:0006355
Cme04g02220 476 Gene3D - 225 276 - -
Cme04g02220 476 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 224 268 IPR004827 GO:0003700|GO:0006355
Cme04g02220 476 MobiDBLite consensus disorder prediction 111 229 - -
Cme04g02220 476 MobiDBLite consensus disorder prediction 111 133 - -
Cme04g02220 476 ProSiteProfiles DOG1 domain profile. 301 476 IPR025422 GO:0006351|GO:0043565
Cme04g02220 476 Coils Coil 14 34 - -
Cme04g02220 476 MobiDBLite consensus disorder prediction 41 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02220 Cme-Chr4:29379807 Cme12g00629 Cme-Chr12:11347536 1.14E-103 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41250 PF14144 DOG1 7.60E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02220 K14431 - csv:101204923 820.846