Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02225 ATGGCCCAGCTCCTCCGTCCCTTACAGTATTTCAATGTCTTTGTCTTCTTGACAATCCTGACTTCAGCCGTTCAGTGCTTTACAGACCCCCTAGATGTTATAGCTCTTCTCGATCTGTATAGTACCCTAAACTACCCACCTGTGCTTAAAGGATGGAGAAAAGATGGTGGGGATCCTTGCGATGGAACGTGGACTGGGGTGTTTTGTGTTGGTTCATCTGTCATAAACCTGGATGTCAGTTCCAATACAATTCTGGGTGAAATTCCTTGTGGCTTACCCCCGAATATCATTAATATGAATCTAAGCCATAATGCCCTATCTGGCCCCATTGGGAATGCTTTTTCTGGCTTACAAAATCTTGTGGAGATGGATCTGTCATACAACGAGCTCACCGGAGATTTATCAAGTTCATTTGCTTCTCTGACTAATCTCAATAGGCTGTGGCATATTAGGTTCTTGCAAAAAAACAAATTCACAGGACCAGTTTCCTACTTATCTGACCTTCCATTAACTGATTTGATTGCGGGAAATAGGTTCGATTTAAGTAACTCTCCACCCTGGGATTTGTCTGTGGAAACAACACCTTTGACACAAAACAATAGTAACCCTCAATTAACAGAACCAATCATCATTGAGAAATGTCCCTACAAGAAAAAGGTTGGGAAAGGGAGGGAAAGATTGGGTCCCGGTGGAATAGCTATGATGGCTGGTGGAGGTGGTTTTGCAATAATCTTTGCAGCTCTCTTCGTTGCAATCTGCAAGACACAAATATGTGCAAAGCAAAGGAGCATGAAGCACATCGCCATGTGTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACTGCACCGGATGGGAGCCCCCATATCTTGTCTCTCAGTTCTCCAGTCGTAGTTGGCGGTCCGAATCGTGCCTGTCCTACTTGTTGTGCTAGAACTGAGAGGGGATATAGCAGAAGTTTCTCTGAGAGAACCAGTTTCCCAGGAAAAACAAAAGCTTACACTGTGGCAGAGCTTGAATCCGCCACTAACATGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCTGATGGCCAAATTTTGGCTGTGAAAAGGGTTGATATGGTGGCACTCTCTTTCACAGAAGAACAATATTTTTTGGATGTGGTCTGCACTGTTTCCCGTTTGAGGCACCCCAACATTGTTAGTCTTTTGGGATACAGTGTAGAGAATGGGGAGCATTTACTAGCCTATGAGTATGTCAGGAATCTGTCCCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCCTGGAGTGTCCGAGTCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCACCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCTTGCTTGATGAAGAATTGATGCCAAAGATTTGTGACTGTGGTTTGTCTGTTTTGAAGCCTCTTGCTGCTCAAATTACTATTGCTGACACTGCCTACTTTGCACCTGAATATGGCCAATATGGGATTGATTATACCAAAAGTGATGTGTATGCATTTGGAGTTTTGTTTTTGGAGCTTATAACCGGAAAGAAACCGAATGATTTGAGACCAGGGATGGAGCAATCTCTATCGAGATGGGCGTCATTTCAGCTTCACGACTGTGGGAATCTAGATGAGATTATTGATCCTGACATTAAAGGAACATTATCTTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCCGTAATGGAACGTCGACCGCCTATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAGAGGAAGGTCGAGATGGAAAAATGTGCAGCAGTGGAAAGTAAAGTAGTT 1899 43.92 MAQLLRPLQYFNVFVFLTILTSAVQCFTDPLDVIALLDLYSTLNYPPVLKGWRKDGGDPCDGTWTGVFCVGSSVINLDVSSNTILGEIPCGLPPNIINMNLSHNALSGPIGNAFSGLQNLVEMDLSYNELTGDLSSSFASLTNLNRLWHIRFLQKNKFTGPVSYLSDLPLTDLIAGNRFDLSNSPPWDLSVETTPLTQNNSNPQLTEPIIIEKCPYKKKVGKGRERLGPGGIAMMAGGGGFAIIFAALFVAICKTQICAKQRSMKHIAMCLPVSKAEDGYSTAPDGSPHILSLSSPVVVGGPNRACPTCCARTERGYSRSFSERTSFPGKTKAYTVAELESATNMYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMVALSFTEEQYFLDVVCTVSRLRHPNIVSLLGYSVENGEHLLAYEYVRNLSLDDALHSVAHNPLSWSVRVQIAHGVAKALDYLHNAFFPPFAHCNLKAANILLDEELMPKICDCGLSVLKPLAAQITIADTAYFAPEYGQYGIDYTKSDVYAFGVLFLELITGKKPNDLRPGMEQSLSRWASFQLHDCGNLDEIIDPDIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRKVEMEKCAAVESKVV 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29416553 29421399 - MELO3C009642.2.1 Cme04g02225 326486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02225 633 PANTHER LEUCINE RICH REPEAT KINASE 2 174 627 - -
Cme04g02225 633 Pfam Protein kinase domain 346 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02225 633 PANTHER LEUCINE RICH REPEAT KINASE 2 12 179 - -
Cme04g02225 633 Gene3D Transferase(Phosphotransferase) domain 1 424 632 - -
Cme04g02225 633 SUPERFAMILY Protein kinase-like (PK-like) 322 613 IPR011009 -
Cme04g02225 633 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 174 627 - -
Cme04g02225 633 Pfam Leucine rich repeat 98 147 IPR001611 GO:0005515
Cme04g02225 633 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 12 179 - -
Cme04g02225 633 Gene3D Ribonuclease Inhibitor 29 219 IPR032675 -
Cme04g02225 633 SUPERFAMILY L domain-like 26 173 - -
Cme04g02225 633 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cme04g02225 633 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02225 633 Gene3D Phosphorylase Kinase; domain 1 308 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02225 Cme-Chr4:29416553 Cme12g00906 Cme-Chr12:15934595 1.27E-125 dispersed
Cme04g02225 Cme-Chr4:29416553 Cme04g02226 Cme-Chr4:29421447 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64834 PF00069 Pkinase 6.90E-34 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02225 - - csv:101204436 1158.28