Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02225 ATGGCCCAGCTCCTCCGTCCCTTACAGTATTTCAATGTCTTTGTCTTCTTGACAATCCTGACTTCAGCCGTTCAGTGCTTTACAGACCCCCTAGATGTTATAGCTCTTCTCGATCTGTATAGTACCCTAAACTACCCACCTGTGCTTAAAGGATGGAGAAAAGATGGTGGGGATCCTTGCGATGGAACGTGGACTGGGGTGTTTTGTGTTGGTTCATCTGTCATAAACCTGGATGTCAGTTCCAATACAATTCTGGGTGAAATTCCTTGTGGCTTACCCCCGAATATCATTAATATGAATCTAAGCCATAATGCCCTATCTGGCCCCATTGGGAATGCTTTTTCTGGCTTACAAAATCTTGTGGAGATGGATCTGTCATACAACGAGCTCACCGGAGATTTATCAAGTTCATTTGCTTCTCTGACTAATCTCAATAGGCTGTGGCATATTAGGTTCTTGCAAAAAAACAAATTCACAGGACCAGTTTCCTACTTATCTGACCTTCCATTAACTGATTTGATTGCGGGAAATAGGTTCGATTTAAGTAACTCTCCACCCTGGGATTTGTCTGTGGAAACAACACCTTTGACACAAAACAATAGTAACCCTCAATTAACAGAACCAATCATCATTGAGAAATGTCCCTACAAGAAAAAGGTTGGGAAAGGGAGGGAAAGATTGGGTCCCGGTGGAATAGCTATGATGGCTGGTGGAGGTGGTTTTGCAATAATCTTTGCAGCTCTCTTCGTTGCAATCTGCAAGACACAAATATGTGCAAAGCAAAGGAGCATGAAGCACATCGCCATGTGTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACTGCACCGGATGGGAGCCCCCATATCTTGTCTCTCAGTTCTCCAGTCGTAGTTGGCGGTCCGAATCGTGCCTGTCCTACTTGTTGTGCTAGAACTGAGAGGGGATATAGCAGAAGTTTCTCTGAGAGAACCAGTTTCCCAGGAAAAACAAAAGCTTACACTGTGGCAGAGCTTGAATCCGCCACTAACATGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCTGATGGCCAAATTTTGGCTGTGAAAAGGGTTGATATGGTGGCACTCTCTTTCACAGAAGAACAATATTTTTTGGATGTGGTCTGCACTGTTTCCCGTTTGAGGCACCCCAACATTGTTAGTCTTTTGGGATACAGTGTAGAGAATGGGGAGCATTTACTAGCCTATGAGTATGTCAGGAATCTGTCCCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCCTGGAGTGTCCGAGTCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCACCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCTTGCTTGATGAAGAATTGATGCCAAAGATTTGTGACTGTGGTTTGTCTGTTTTGAAGCCTCTTGCTGCTCAAATTACTATTGCTGACACTGCCTACTTTGCACCTGAATATGGCCAATATGGGATTGATTATACCAAAAGTGATGTGTATGCATTTGGAGTTTTGTTTTTGGAGCTTATAACCGGAAAGAAACCGAATGATTTGAGACCAGGGATGGAGCAATCTCTATCGAGATGGGCGTCATTTCAGCTTCACGACTGTGGGAATCTAGATGAGATTATTGATCCTGACATTAAAGGAACATTATCTTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCCGTAATGGAACGTCGACCGCCTATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAGAGGAAGGTCGAGATGGAAAAATGTGCAGCAGTGGAAAGTAAAGTAGTT 1899 43.92 MAQLLRPLQYFNVFVFLTILTSAVQCFTDPLDVIALLDLYSTLNYPPVLKGWRKDGGDPCDGTWTGVFCVGSSVINLDVSSNTILGEIPCGLPPNIINMNLSHNALSGPIGNAFSGLQNLVEMDLSYNELTGDLSSSFASLTNLNRLWHIRFLQKNKFTGPVSYLSDLPLTDLIAGNRFDLSNSPPWDLSVETTPLTQNNSNPQLTEPIIIEKCPYKKKVGKGRERLGPGGIAMMAGGGGFAIIFAALFVAICKTQICAKQRSMKHIAMCLPVSKAEDGYSTAPDGSPHILSLSSPVVVGGPNRACPTCCARTERGYSRSFSERTSFPGKTKAYTVAELESATNMYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMVALSFTEEQYFLDVVCTVSRLRHPNIVSLLGYSVENGEHLLAYEYVRNLSLDDALHSVAHNPLSWSVRVQIAHGVAKALDYLHNAFFPPFAHCNLKAANILLDEELMPKICDCGLSVLKPLAAQITIADTAYFAPEYGQYGIDYTKSDVYAFGVLFLELITGKKPNDLRPGMEQSLSRWASFQLHDCGNLDEIIDPDIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRKVEMEKCAAVESKVV 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29416553 29421399 - MELO3C009642.2.1 Cme04g02225 326486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02225 633 PANTHER LEUCINE RICH REPEAT KINASE 2 174 627 - -
Cme04g02225 633 Pfam Protein kinase domain 346 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02225 633 PANTHER LEUCINE RICH REPEAT KINASE 2 12 179 - -
Cme04g02225 633 Gene3D Transferase(Phosphotransferase) domain 1 424 632 - -
Cme04g02225 633 SUPERFAMILY Protein kinase-like (PK-like) 322 613 IPR011009 -
Cme04g02225 633 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 174 627 - -
Cme04g02225 633 Pfam Leucine rich repeat 98 147 IPR001611 GO:0005515
Cme04g02225 633 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 12 179 - -
Cme04g02225 633 Gene3D Ribonuclease Inhibitor 29 219 IPR032675 -
Cme04g02225 633 SUPERFAMILY L domain-like 26 173 - -
Cme04g02225 633 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cme04g02225 633 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02225 633 Gene3D Phosphorylase Kinase; domain 1 308 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02225 - - - csv:101204436 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02225 Cme-Chr4:29416553 Cme12g00906 Cme-Chr12:15934595 1.27E-125 dispersed
Cme04g02225 Cme-Chr4:29416553 Cme04g02226 Cme-Chr4:29421447 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme12g00906 . 458 751 Strubbelig Receptor Gene Family AT1G11130 53.7 5.9e-85 312.4
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme04g01519 . 1 719 Strubbelig Receptor Gene Family AT1G53730 58.3 3.7e-207 718.4
Cme01g02755 . 1 691 Strubbelig Receptor Gene Family AT1G53730 59.0 5.1e-172 601.7
Cme03g00822 . 5 660 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-150 530.8
Cme12g00906 . 79 759 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-149 525.4
Cme04g01519 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.8 2.4e-187 652.5
Cme01g02755 . 6 681 Strubbelig Receptor Gene Family AT3G14350 53.5 1.0e-153 540.8
Cme12g00906 . 208 781 Strubbelig Receptor Gene Family AT4G22130 63.0 3.3e-179 625.2
Cme04g01519 . 398 719 Strubbelig Receptor Gene Family AT4G22130 63.3 1.9e-118 423.3
Cme01g02755 . 368 683 Strubbelig Receptor Gene Family AT4G22130 65.1 8.1e-117 417.9
Cme01g00355 . 454 778 Strubbelig Receptor Gene Family AT4G22130 56.8 2.9e-106 382.9
Cme03g00822 . 355 674 Strubbelig Receptor Gene Family AT4G22130 57.1 1.5e-99 360.5
Cme08g00325 . 367 655 Strubbelig Receptor Gene Family AT4G22130 60.5 1.3e-98 357.5
Cme04g02226 . 299 621 Strubbelig Receptor Gene Family AT4G22130 50.5 4.2e-89 325.9
Cme04g02225 . 334 624 Strubbelig Receptor Gene Family AT4G22130 51.2 1.7e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64834 PF00069 Pkinase 6.90E-34 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02225 Cme_Chr04 FPKM 7.772109 8.754768 3.20889 2.59816 4.500356 1.530192 6.460474 6.526831 7.565755 11.080401