Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02226 ATGAACTATCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCCATAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAACCTGATCGATTTGAAGCAATTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCTCACAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTACATGGGAAATCTCCGACATCTAAATCTTAGCCATAATACTCTATCTGGTGTGATTGGGAATGTATTCACTGGTTTACAGAATTTGAGAGAGATGTTCTTGCAGAAGAACAAATTCACTGGATCAGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGATTGGGGGCAATAGGTTTCGTCCACAAGTCAATTCTCCGCCCTGGGACTTTCCCCTGGAAAAAACACCTATGGTGCAGAACATCAGTGGTCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGAGTGTAGTCGGGCATGAGAAGAAAAGGCTTGGTCCTGGTGGAATTGTTCTCCTGGTTGGTGGGTTAACACTAGTTGTAACCTTTGCAGCTCTCTTTATCGTATTTGCCATGAAGAAAGTGCATGAAAATAACATAAATTTGAAGATTGGGAATATATTACCCTGTTCTCTTCCTCTGGACAAAGCTGAAGATGATTCGTCTGCTGCACCAGAAGACTCCCAAAACTTTCCCTTGGGTTCTCAACTGAGGGGTGTTCCAAGGCCTATACCTTTATTAAATCACACGAGAACCGAGAAAGTATCTGGAAGAAAAGGTTTCTCAAAGAGATGCAGGCTCCTAGTGAGAACAAAAGTTTACGCTCTGGCAGAGCTTCAATCCGCTACTAACAACTTTAGTCAAGAGAATCTTCTAGGAGAGGGATCTCTTGGTGCTGTTTATAGGGCTGAATTTCCCGATGGTCAAGTTTTGGCTGTGAAAAATATCGACATGGGAATGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATCATTTCGCTGATTGGATATTGTGTAGAGCATGGACAACATATACTCGGATATGAATACGTTCGAAATCTTTCTCTTGACGAAGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGCCTCCAAATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTAAAGGCTGCCAATATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTCGTGAGCAATAGAATTAAAACGAAGGCTTCTGAGATTGTCAGTGGCGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGTATTTGATAATACGAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTTACAGGGAGAAAACCATATGACAATTTGAAACCGAGGAAAGAGCAATTGTTGGTGAAATGGGCTTCATCTCAGCTTCATGTCAAAACGAGTTTAGAACAAATGGTTGATCCAAGCATCAAAGGAACATTTTCCTGCCAGGCTCTCTCAAGCTTTGTCGATATTGTCTCCCTTTGTATACAGCCCGTCAAGGAATTTCGACCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTCGAAAGAAAGATGGAAATGATGAAACGTGTTGCATCAGATGAAACTGAAGTCAACCCTTTTGAGAAATCTTTTCGTTCTACCAACACTGGCTTTAGGGAAGAATTGAATATACGTATAAAAATGGTTGAGTGTGAAATACACGTGGTCTCAACGACTTTAACGGATTTAGCTTACGTGGACGCCAGCTCATCAGTTGTGATCCGTACTCAAGAACTTCGTCTTCTCCATTGCCATTGTTTCAGTTTATCTTCACTCAATCAATTTCTCTCGATCCTTTTGGCGTTCTTTACAGTTTGGGAAAATTTAAGAAAAGCATTTCCATTAGGGTTTGCTATAAAATGTCTCTTTGTTTTCTGA 2175 41.75 MNYPLELKGWRKEGGDPCEESWTGVSCSGSSIIYLKLHGLNLTGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNVTHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMFLQKNKFTGSVAYLSHLPLIDLIGGNRFRPQVNSPPWDFPLEKTPMVQNISGPPTTKSNAIQNYPSRSVVGHEKKRLGPGGIVLLVGGLTLVVTFAALFIVFAMKKVHENNINLKIGNILPCSLPLDKAEDDSSAAPEDSQNFPLGSQLRGVPRPIPLLNHTRTEKVSGRKGFSKRCRLLVRTKVYALAELQSATNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNIDMGMLSFTEEEQFLDVVWTASRLRHPNIISLIGYCVEHGQHILGYEYVRNLSLDEALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVSNRIKTKASEIVSGDRGYLAPEHGQPVFDNTRSDVYSFGVLLLELVTGRKPYDNLKPRKEQLLVKWASSQLHVKTSLEQMVDPSIKGTFSCQALSSFVDIVSLCIQPVKEFRPPMSEIVEHLTNLERKMEMMKRVASDETEVNPFEKSFRSTNTGFREELNIRIKMVECEIHVVSTTLTDLAYVDASSSVVIRTQELRLLHCHCFSLSSLNQFLSILLAFFTVWENLRKAFPLGFAIKCLFVF 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29421447 29427182 - MELO3C009641.2.1 Cme04g02226 326487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02226 724 Gene3D Ribonuclease Inhibitor 2 71 IPR032675 -
Cme04g02226 724 Pfam Leucine rich repeat 76 136 IPR001611 GO:0005515
Cme04g02226 724 SUPERFAMILY Protein kinase-like (PK-like) 306 604 IPR011009 -
Cme04g02226 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 1 106 - -
Cme04g02226 724 Gene3D Phosphorylase Kinase; domain 1 290 404 - -
Cme04g02226 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 106 - -
Cme04g02226 724 Gene3D Ribonuclease Inhibitor 72 165 IPR032675 -
Cme04g02226 724 ProSiteProfiles Protein kinase domain profile. 327 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02226 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 102 152 - -
Cme04g02226 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 156 616 - -
Cme04g02226 724 Gene3D Transferase(Phosphotransferase) domain 1 405 630 - -
Cme04g02226 724 Pfam Leucine rich repeat N-terminal domain 7 28 IPR013210 -
Cme04g02226 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 102 152 - -
Cme04g02226 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 156 616 - -
Cme04g02226 724 SUPERFAMILY L domain-like 16 149 - -
Cme04g02226 724 Pfam Protein kinase domain 328 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02226 - - - csv:101204194 1149.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02226 Cme-Chr4:29421447 Cme12g00906 Cme-Chr12:15934595 1.10E-148 dispersed
Cme04g02225 Cme-Chr4:29416553 Cme04g02226 Cme-Chr4:29421447 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme12g00906 . 458 751 Strubbelig Receptor Gene Family AT1G11130 53.7 5.9e-85 312.4
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme04g01519 . 1 719 Strubbelig Receptor Gene Family AT1G53730 58.3 3.7e-207 718.4
Cme01g02755 . 1 691 Strubbelig Receptor Gene Family AT1G53730 59.0 5.1e-172 601.7
Cme03g00822 . 5 660 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-150 530.8
Cme12g00906 . 79 759 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-149 525.4
Cme04g01519 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.8 2.4e-187 652.5
Cme01g02755 . 6 681 Strubbelig Receptor Gene Family AT3G14350 53.5 1.0e-153 540.8
Cme12g00906 . 208 781 Strubbelig Receptor Gene Family AT4G22130 63.0 3.3e-179 625.2
Cme04g01519 . 398 719 Strubbelig Receptor Gene Family AT4G22130 63.3 1.9e-118 423.3
Cme01g02755 . 368 683 Strubbelig Receptor Gene Family AT4G22130 65.1 8.1e-117 417.9
Cme01g00355 . 454 778 Strubbelig Receptor Gene Family AT4G22130 56.8 2.9e-106 382.9
Cme03g00822 . 355 674 Strubbelig Receptor Gene Family AT4G22130 57.1 1.5e-99 360.5
Cme08g00325 . 367 655 Strubbelig Receptor Gene Family AT4G22130 60.5 1.3e-98 357.5
Cme04g02226 . 299 621 Strubbelig Receptor Gene Family AT4G22130 50.5 4.2e-89 325.9
Cme04g02225 . 334 624 Strubbelig Receptor Gene Family AT4G22130 51.2 1.7e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64835 PF00069 Pkinase 1.80E-33 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02226 Cme_Chr04 FPKM 12.960834 14.583988 19.918894 21.334127 29.074364 25.441483 26.559517 27.049324 28.565887 26.233229