Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02226 ATGAACTATCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCCATAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAACCTGATCGATTTGAAGCAATTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCTCACAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTACATGGGAAATCTCCGACATCTAAATCTTAGCCATAATACTCTATCTGGTGTGATTGGGAATGTATTCACTGGTTTACAGAATTTGAGAGAGATGTTCTTGCAGAAGAACAAATTCACTGGATCAGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGATTGGGGGCAATAGGTTTCGTCCACAAGTCAATTCTCCGCCCTGGGACTTTCCCCTGGAAAAAACACCTATGGTGCAGAACATCAGTGGTCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGAGTGTAGTCGGGCATGAGAAGAAAAGGCTTGGTCCTGGTGGAATTGTTCTCCTGGTTGGTGGGTTAACACTAGTTGTAACCTTTGCAGCTCTCTTTATCGTATTTGCCATGAAGAAAGTGCATGAAAATAACATAAATTTGAAGATTGGGAATATATTACCCTGTTCTCTTCCTCTGGACAAAGCTGAAGATGATTCGTCTGCTGCACCAGAAGACTCCCAAAACTTTCCCTTGGGTTCTCAACTGAGGGGTGTTCCAAGGCCTATACCTTTATTAAATCACACGAGAACCGAGAAAGTATCTGGAAGAAAAGGTTTCTCAAAGAGATGCAGGCTCCTAGTGAGAACAAAAGTTTACGCTCTGGCAGAGCTTCAATCCGCTACTAACAACTTTAGTCAAGAGAATCTTCTAGGAGAGGGATCTCTTGGTGCTGTTTATAGGGCTGAATTTCCCGATGGTCAAGTTTTGGCTGTGAAAAATATCGACATGGGAATGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATCATTTCGCTGATTGGATATTGTGTAGAGCATGGACAACATATACTCGGATATGAATACGTTCGAAATCTTTCTCTTGACGAAGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGCCTCCAAATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTAAAGGCTGCCAATATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTCGTGAGCAATAGAATTAAAACGAAGGCTTCTGAGATTGTCAGTGGCGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGTATTTGATAATACGAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTTACAGGGAGAAAACCATATGACAATTTGAAACCGAGGAAAGAGCAATTGTTGGTGAAATGGGCTTCATCTCAGCTTCATGTCAAAACGAGTTTAGAACAAATGGTTGATCCAAGCATCAAAGGAACATTTTCCTGCCAGGCTCTCTCAAGCTTTGTCGATATTGTCTCCCTTTGTATACAGCCCGTCAAGGAATTTCGACCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTCGAAAGAAAGATGGAAATGATGAAACGTGTTGCATCAGATGAAACTGAAGTCAACCCTTTTGAGAAATCTTTTCGTTCTACCAACACTGGCTTTAGGGAAGAATTGAATATACGTATAAAAATGGTTGAGTGTGAAATACACGTGGTCTCAACGACTTTAACGGATTTAGCTTACGTGGACGCCAGCTCATCAGTTGTGATCCGTACTCAAGAACTTCGTCTTCTCCATTGCCATTGTTTCAGTTTATCTTCACTCAATCAATTTCTCTCGATCCTTTTGGCGTTCTTTACAGTTTGGGAAAATTTAAGAAAAGCATTTCCATTAGGGTTTGCTATAAAATGTCTCTTTGTTTTCTGA 2175 41.75 MNYPLELKGWRKEGGDPCEESWTGVSCSGSSIIYLKLHGLNLTGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNVTHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMFLQKNKFTGSVAYLSHLPLIDLIGGNRFRPQVNSPPWDFPLEKTPMVQNISGPPTTKSNAIQNYPSRSVVGHEKKRLGPGGIVLLVGGLTLVVTFAALFIVFAMKKVHENNINLKIGNILPCSLPLDKAEDDSSAAPEDSQNFPLGSQLRGVPRPIPLLNHTRTEKVSGRKGFSKRCRLLVRTKVYALAELQSATNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNIDMGMLSFTEEEQFLDVVWTASRLRHPNIISLIGYCVEHGQHILGYEYVRNLSLDEALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVSNRIKTKASEIVSGDRGYLAPEHGQPVFDNTRSDVYSFGVLLLELVTGRKPYDNLKPRKEQLLVKWASSQLHVKTSLEQMVDPSIKGTFSCQALSSFVDIVSLCIQPVKEFRPPMSEIVEHLTNLERKMEMMKRVASDETEVNPFEKSFRSTNTGFREELNIRIKMVECEIHVVSTTLTDLAYVDASSSVVIRTQELRLLHCHCFSLSSLNQFLSILLAFFTVWENLRKAFPLGFAIKCLFVF 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29421447 29427182 - MELO3C009641.2.1 Cme04g02226 326487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02226 724 Gene3D Ribonuclease Inhibitor 2 71 IPR032675 -
Cme04g02226 724 Pfam Leucine rich repeat 76 136 IPR001611 GO:0005515
Cme04g02226 724 SUPERFAMILY Protein kinase-like (PK-like) 306 604 IPR011009 -
Cme04g02226 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 1 106 - -
Cme04g02226 724 Gene3D Phosphorylase Kinase; domain 1 290 404 - -
Cme04g02226 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 106 - -
Cme04g02226 724 Gene3D Ribonuclease Inhibitor 72 165 IPR032675 -
Cme04g02226 724 ProSiteProfiles Protein kinase domain profile. 327 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02226 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 102 152 - -
Cme04g02226 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 156 616 - -
Cme04g02226 724 Gene3D Transferase(Phosphotransferase) domain 1 405 630 - -
Cme04g02226 724 Pfam Leucine rich repeat N-terminal domain 7 28 IPR013210 -
Cme04g02226 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 102 152 - -
Cme04g02226 724 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 156 616 - -
Cme04g02226 724 SUPERFAMILY L domain-like 16 149 - -
Cme04g02226 724 Pfam Protein kinase domain 328 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02226 Cme-Chr4:29421447 Cme12g00906 Cme-Chr12:15934595 1.10E-148 dispersed
Cme04g02225 Cme-Chr4:29416553 Cme04g02226 Cme-Chr4:29421447 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64835 PF00069 Pkinase 1.80E-33 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02226 - - csv:101204194 1149.42