Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02239 ATGAGAACGATTCTCCATTCACTTGTCTCTAACTGGAAACCTCATTTACCTGTGTTTCGTCTTGTTAGTGCAACGGTAGAACTTAGAAGCAACTTCGTGAGGAATGTGTTTTATGGGTTTGGTGAAAATTTGTCTTCAAAACAATGTCTTGCAGTTAGCACTGTCTTGGGGTTGGAGGAAGGCAAGGAATGTGTCATTGTTGGAACCGTCTACAAGCACATGAAACTTAAACCTACCATTCTGGATGAGTATTCAAAGGAGAGATCTGCCATCCCACTTGTTAAGCCGCACAACTTTATGCATCCAGATGATCATCTTGTATTGGAAGATGAAAGTGGCAGAGTAAAGCTTTCTGGGGATGTGCTTTTACCTTCTGTGTATGTTACAGGGATTGTCCTTGCATTGCATGGAAAGGAAACTTCCGTTGGTGACTTTTTGGTTTTGGACATCCTAGAAGCTGACTTGCCACCCCAGATAGAGCGGCCGCTCATATCAAACTGTGAACCTAAACTGCTTTACTGCGCCTTGGGGGAAGGACTTGAAATGGATGATGGCTATCACTTGATTAATTCAACTAAGATTCAAATGCATGCAGGTGAAGATAAGTACGTGATTTTTGTGTCGGGCCTAAGTATTGGGAGTAGCATCTCCAATCCTCTACAGTTTCAGCTCCTTGTTGATCATATAACAGGACATTTAGGGGATGAGAAGGAACAGGGGATTGCGGCTCAAATAGTTCATGTTGTCATTTGTGGAAACTCTGTTGAAATTCCTCGAGGAATTTTAAATGGGCAGGAGTCTTTGATTTCAGTAGCTGAAGAAGGCTTGTTTGTCAAAGTTGTTTCAAATGATGTCAGTGATTATAGGTTTTTTGTTGATGCATGCATGATGTATTTTGGGCAGCATTTGTCTGCAAAGGACCAAACAAAGCTGACAGAACCGCTTAAAGAGCTAGACATCCAATTGAATCAGCTTGCTGCAGGTTTACCTGTGGACATCATGCCGGGATCCAGTGACCCAGCCAATTTTTCCTTGCCTCAGCAGGTCAAATCTTTACAGCCGAGAACTCCCACTTTCCATTCTCGGTTTCTTGGAACATCAGGTCAGAATGTAGATGATCTCGAGAAGTACTCAGAGGCTAAAGATAAACTAGAATTTATGGAGAGGACTTTGAGATGGAGACATCTAGCACCAACTGCTCCAAATACTCTTGGTTGTTACCCATTCACTGACCGAGATCCTTTCCTGATCGAGAGCTGTCCTCATGTTTATTTTATTGGGAATCAGGACAAGTTTGATACTCGTTTAATAAAGGGAGCTGAAGGGCAGATGGTAAGACTCATTGCGATTCCAAGATTTTGTGAGACGGGGATTGCCGTAATGGTAATTTGCTTTTACTTCAATTCACCCTTTAATATTGTTGCTGCAATGCTTAACTTGAGAAACCTTGAATGCCACACTCTGAGTTTTGGGACTGAATTCAGCTGA 1488 42.27 MRTILHSLVSNWKPHLPVFRLVSATVELRSNFVRNVFYGFGENLSSKQCLAVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLEDESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISNCEPKLLYCALGEGLEMDDGYHLINSTKIQMHAGEDKYVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGILNGQESLISVAEEGLFVKVVSNDVSDYRFFVDACMMYFGQHLSAKDQTKLTEPLKELDIQLNQLAAGLPVDIMPGSSDPANFSLPQQVKSLQPRTPTFHSRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIAIPRFCETGIAVMVICFYFNSPFNIVAAMLNLRNLECHTLSFGTEFS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29530212 29536729 + MELO3C030998.2.1 Cme04g02239 326500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02239 495 Gene3D - 181 357 - -
Cme04g02239 495 Pfam DNA polymerase delta subunit OB-fold domain 48 150 IPR040663 -
Cme04g02239 495 Gene3D - 358 494 - -
Cme04g02239 495 Gene3D - 27 155 - -
Cme04g02239 495 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 29 490 IPR024826 -
Cme04g02239 495 Pfam DNA polymerase alpha/epsilon subunit B 360 433 IPR007185 GO:0003677|GO:0006260
Cme04g02239 495 Pfam DNA polymerase alpha/epsilon subunit B 204 348 IPR007185 GO:0003677|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02239 K02328 POLD2; DNA polymerase delta subunit 2 - csv:101221438 648.662
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1268 . . . . . Bpe03g01146 . Bma10g00174 . Cmo14g00422 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0534 Cone19ag0482 . . . Cme04g02239 Blo07g01274 . . Bda05g01086 . . . . Sed02g0364 . . . Cma14g00418 . Car14g00385 Cpe03g00370 . Bhi11g02541 Tan08g1499 Cmetu04g0761 . . . . Cla10g01668 Cam10g1715 Cec10g1767 Cco10g1734 Clacu10g1736 Cmu10g2486 Cre10g1868 Lsi03g01734 Csa03g03577 Chy04g01776 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005225 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02239 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 1.659796 1.810995 3.190061 1.333665 1.348031 1.799258