Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02241 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACCCTTTATTGTGGAGCAGAGAGCTTGAAAAGCATTCTTATGGGGAGTTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCTGATGCCACTTTCGTCGGCGTCTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGGCTTGCTCAAGAAAATGGAAACATAACCGAAGGTATTCTTCGAAGTGCAGTTTGTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGACGGTCATGGGGAATAAAACCAACAATTGCAGCTATGGGTTCTTGTTGTCTGGTGGGAGTTATCTGGAGAGGTACATTATTCGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCAAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATTGTTGTTATGAAGCATGGAGTTTGGCGTATCAAAGGCATAATTCAGGTTTCCAGATCAATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTCGATCCATCCTTTCCACGATTCCATCTTGCAGAGCCTCTTCGACGGCCTGTTCTTACTGCAGAACCATCGTTAAGTACAAGAGTTCTACAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTCTGGGAGCATCTAACAAATCAACAAGCAGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTCGTTAAAACAGCACTAACTGAGGCTGCAAGGAAGAGGGAAATGAGATACGATGATCTGAAGAAGCTCGAAAAAGGCATACGACGGTTCTTTCATGATGATATCACGGTTGTTGTCATATTTCTGGACCATGAGTTGCAAGGGAAGAAAGTACGTGTACCAGAGTTATCTGTTCGTGGGTTTTCCGATACCGTCGGACCATCAAATATCAATGTTCTTCGAGGCATCGATGAGAATGGAAGGTCTGCTGGCTGA 1173 43.82 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDPLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEGILRSAVCATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLFVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDHELQGKKVRVPELSVRGFSDTVGPSNINVLRGIDENGRSAG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29542684 29546292 + MELO3C009625.2.1 Cme04g02241 326502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02241 390 PANTHER ALPHABET, ISOFORM E-RELATED 6 368 - -
Cme04g02241 390 Gene3D - 28 358 IPR036457 -
Cme04g02241 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Cme04g02241 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Cme04g02241 390 CDD PP2Cc 47 348 IPR001932 -
Cme04g02241 390 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 368 - -
Cme04g02241 390 Pfam Protein phosphatase 2C 69 316 IPR001932 -
Cme04g02241 390 SUPERFAMILY PP2C-like 52 349 IPR036457 -
Cme04g02241 390 SMART PP2C_4 43 346 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00108 Cme-Chr1:745087 Cme04g02241 Cme-Chr4:29542684 3.04E-150 dispersed
Cme04g02241 Cme-Chr4:29542684 Cme08g00965 Cme-Chr8:6344338 2.65E-149 dispersed
Cme04g02241 Cme-Chr4:29542684 Cme11g00367 Cme-Chr11:3727600 1.44E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02241 K01102 - csv:101222146 774.622