Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02242 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATTGTTGGTCGTCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCATTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACTCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGATTTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATATTGACTGAACGTGGCTACTCGTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGACATGAAGGAGAAACTAGCTTACATAGCCCTGGATTACGAGCAAGAGTTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACTATTGGTGCTGAAAGATTCCGATGCCCTGAAGTTCTCTTCCAGCCATCCATGATAGGGATGGAAGCAGCTGGTATTCATGAAACCACGTACAATTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTACGGCAACATTGTCCTCAGTGGCGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGTAAGGAGATCACTGCATTAGCTCCAAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 46.56 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29547479 29551183 - MELO3C009624.2.1 Cme04g02242 326503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02242 377 PANTHER ACTIN 3 1 376 - -
Cme04g02242 377 PANTHER ACTIN 1 376 IPR004000 -
Cme04g02242 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cme04g02242 377 Gene3D - 10 371 - -
Cme04g02242 377 Gene3D - 140 340 - -
Cme04g02242 377 SMART actin_3 7 377 IPR004000 -
Cme04g02242 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cme04g02242 377 Pfam Actin 5 377 IPR004000 -
Cme04g02242 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cme04g02242 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cme04g02242 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cme04g02242 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cme04g02242 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cme04g02242 377 PRINTS Actin signature 28 37 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 51 62 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 63 85 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 117 130 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 142 161 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 238 254 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02242 K10355 ACTF; actin, other eukaryote - psom:113309355 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01757 Cme-Chr2:24499946 Cme04g02242 Cme-Chr4:29547479 5.95E-93 dispersed
Cme04g02242 Cme-Chr4:29547479 Cme10g00888 Cme-Chr10:6260020 0 dispersed
Cme05g01869 Cme-Chr5:27446445 Cme04g02242 Cme-Chr4:29547479 2.88E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.4e-215 743.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.8e-213 738.4
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.0e-212 734.9
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT2G37620 94.2 3.6e-201 697.6
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT2G37620 90.2 1.0e-195 679.5
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 3.7e-214 740.7
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.2e-214 740.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT5G59370 92.8 2.4e-197 684.9
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT5G59370 89.9 9.4e-194 672.9
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.6e-214 741.9
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 2.8e-214 741.1
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.2e-214 740.0
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G46520 93.0 1.1e-197 686.0
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G46520 90.2 4.2e-194 674.1
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.3e-215 744.2
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.3e-215 743.8
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.1e-213 737.6
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G12110 94.4 2.3e-200 694.9
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G12110 89.9 5.0e-195 677.2
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 4.6e-209 723.8
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G18780 93.0 2.2e-198 688.3
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G18780 85.4 1.5e-188 655.6
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.6e-209 725.3
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.0e-209 723.4
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.9e-209 723.0
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT1G49240 93.0 2.2e-198 688.3
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT1G49240 85.7 5.3e-189 657.1
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.2e-214 740.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.1e-213 737.6
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 5.8e-212 733.4
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT5G09810 95.3 9.4e-202 699.5
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT5G09810 89.7 2.5e-194 674.9
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 2.4e-56 214.9
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT2G19760 73.3 5.1e-54 207.2
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT2G19760 64.1 3.3e-53 204.5
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 6.0e-55 210.3
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT4G29350 74.0 1.7e-54 208.8
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT4G29350 65.4 3.3e-53 204.5
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT4G29340 85.8 2.9e-65 244.6
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT4G29340 68.7 6.4e-52 200.3
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT4G29340 59.7 2.7e-50 194.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02242 Cme_Chr04 FPKM 1.120773 2.033325 3.507244 3.487257 47.227016 48.055717 48.634392 5.045346 4.851652 4.482683