Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02242 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATTGTTGGTCGTCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCATTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACTCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGATTTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATATTGACTGAACGTGGCTACTCGTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGACATGAAGGAGAAACTAGCTTACATAGCCCTGGATTACGAGCAAGAGTTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACTATTGGTGCTGAAAGATTCCGATGCCCTGAAGTTCTCTTCCAGCCATCCATGATAGGGATGGAAGCAGCTGGTATTCATGAAACCACGTACAATTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTACGGCAACATTGTCCTCAGTGGCGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGTAAGGAGATCACTGCATTAGCTCCAAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 46.56 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29547479 29551183 - MELO3C009624.2.1 Cme04g02242 326503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02242 377 PANTHER ACTIN 3 1 376 - -
Cme04g02242 377 PANTHER ACTIN 1 376 IPR004000 -
Cme04g02242 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cme04g02242 377 Gene3D - 10 371 - -
Cme04g02242 377 Gene3D - 140 340 - -
Cme04g02242 377 SMART actin_3 7 377 IPR004000 -
Cme04g02242 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cme04g02242 377 Pfam Actin 5 377 IPR004000 -
Cme04g02242 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cme04g02242 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cme04g02242 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cme04g02242 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cme04g02242 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cme04g02242 377 PRINTS Actin signature 28 37 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 51 62 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 63 85 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 117 130 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 142 161 IPR004000 -
Cme04g02242 377 PRINTS Actin signature 238 254 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01757 Cme-Chr2:24499946 Cme04g02242 Cme-Chr4:29547479 5.95E-93 dispersed
Cme04g02242 Cme-Chr4:29547479 Cme10g00888 Cme-Chr10:6260020 0 dispersed
Cme05g01869 Cme-Chr5:27446445 Cme04g02242 Cme-Chr4:29547479 2.88E-34 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02242 K10355 - psom:113309355 750.74