Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02252 ATGGGTGATGAAATGTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACTGAGGAACCCGTTCATAGATTTGGGGAAACTATCAGGTTTAGGACGAGACAACGGTGGAGAAGGCGTCAAGTCCAAATCCCTCCTGAGACTCAGAATATCACTATGGAATTGAGTGAAATCATGGTCAATTCAGGCAATGGGAATTCATTACAGCCATTACAACCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAACGAGACAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGAGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCATGCCTTTATCGATGGTTACATCTACATTCAGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACAAAAAATGTGACGCCAATTTATGGGCGTGGCAGCAATACACCTGCGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGACCTCATGCTCGAAAGGTTGAAAGTTTGAGGCAAACCATCCAAAGGACTGCATTTAGTTTCCCCGTGGAGGATATGATTCGACGATTAGGAAACAGATTTGATTTCAATCGTGATCTAGACCAACCGCCAGAGCCAGACAGCTCAAATGAAACCTTCGGTAGATCTCCAACATTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCATTGCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCATTGAGACAGGGGAAACACGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACACGAGTTTCTTCTCTTGCTTCTGCGTTTAATTCTGCTGATAGGCTTCCAGAGGGTTTTTTGTATACGGATCCGCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCTTTCTCTAGTATTGCTGCTGTCATCAATTCAGAGAGTCAAATGGATACTGCTGTAGAAATTGATTCCATGGTTTCCATTTCAACATCATCCTCCAGAAGGAGAAATGATGCTTTACAAGTTTCGGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTAGCTTGA 1275 43.06 MGDEMFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGETIRFRTRQRWRRRQVQIPPETQNITMELSEIMVNSGNGNSLQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKNVTPIYGRGSNTPATEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEDMIRRLGNRFDFNRDLDQPPEPDSSNETFGRSPTLLNRILTSRGIRREQISLPHDDVGDLAHTDVSSIETGETRLQSLPVLRSLLHRTRVSSLASAFNSADRLPEGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDALQVSDVDSGNSRAPRRRRLA 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29595967 29600073 + MELO3C009615.2.1 Cme04g02252 326513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02252 424 PANTHER OS01G0830200 PROTEIN 19 421 - -
Cme04g02252 424 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Cme04g02252 424 MobiDBLite consensus disorder prediction 83 133 - -
Cme04g02252 424 SMART ring_2 141 181 IPR001841 -
Cme04g02252 424 MobiDBLite consensus disorder prediction 393 413 - -
Cme04g02252 424 MobiDBLite consensus disorder prediction 98 133 - -
Cme04g02252 424 CDD RING-HC_AtRMA_like 139 183 - -
Cme04g02252 424 MobiDBLite consensus disorder prediction 393 424 - -
Cme04g02252 424 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Cme04g02252 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 421 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cme04g02252 424 SUPERFAMILY RING/U-box 137 194 - -
Cme04g02252 424 Pfam Zinc finger, C3HC4 type (RING finger) 141 186 - -
Cme04g02252 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 200 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01692 Cme-Chr4:24228697 Cme04g02252 Cme-Chr4:29595967 9.45E-39 dispersed
Cme04g02252 Cme-Chr4:29595967 Cme08g00502 Cme-Chr8:3101352 1.30E-26 dispersed
Cme04g02252 Cme-Chr4:29595967 Cme03g01984 Cme-Chr3:27660739 7.74E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02252 K10666 - csv:101220497 812.757