Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02253 ATGGTGGAGTTGGGTTTGAGCCTTGGTGATCATCCATCTTCCAATTCCAATAATAATACTAATAAGCCGTTTTCTAATTTTCTATCTAAACCAATTTCTTCTTCTTCTAATTCTTCTTCCTCTCTTATGGCTTTGGGGTTTTGTGTTGGTTTAATCGGACGTCATTCTGCTTCTGCTTCTGCTTCGGTTCAAGATGATGAAGAAGATGATGATGAGCTGGATGATGATGATGATCGGAAAACGGTTCTTGCCGGTTCAACTTCCGGTTTGGATCCACCGGTTCAGCTTGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCTTCTTCTCCCCTGCTTCCTTTCCCATGGCTTTCTCATCACTTGATGGGGGAAGTCGGGGGGAGTTCAGAGGGAGGAGAAAGGGTAGAGACATTGGATGTGAAGAGGGTGCTGGTGGAGGAGAGAGAAGATAGGGTGGCGGCGGTGGCAGTGGCGGCGTTGTCGTCTCCGAACAGTACGGTGTCATGTTTTGAAATGGAATTTGGAGGAGGAGGAGGAGGAGGGATTAGAAGGAAGAGATCATGGGATCATATGGAAATGGAAACGGAAAGAGGAGGAGGATCAGGAGGAGGTTGTTCAAGAATAATGAGTGATGATGAAGATAACAATGCTTCTGCTTCTGCTGCTGCTCGTAAAAAGCTTCGACTTTCTAAACAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTCTTAATCCTAAGCAGAAGCTAGCACTAGCAAAGCAGCTAAACCTCCGACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGAAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCTTTTTATATGCAACTTCCAGCCACTACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCTACCACCACCACCACTACCACCACCGCTCCCACCACCCCCGCCCCGTCCTCCGCTCTCTGTCTCGCTAACAAACCCAAGATCTTGCCATTTCCTCATCTGCATCAGGCTGCTTCATGA 1140 46.05 MVELGLSLGDHPSSNSNNNTNKPFSNFLSKPISSSSNSSSSLMALGFCVGLIGRHSASASASVQDDEEDDDELDDDDDRKTVLAGSTSGLDPPVQLDLLPLAPVPRSSSSSSPLLPFPWLSHHLMGEVGGSSEGGERVETLDVKRVLVEEREDRVAAVAVAALSSPNSTVSCFEMEFGGGGGGGIRRKRSWDHMEMETERGGGSGGGCSRIMSDDEDNNASASAAARKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTTTTTTAPTTPAPSSALCLANKPKILPFPHLHQAAS 379
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 29613050 29615641 + MELO3C009614.2.1 Cme04g02253 326514
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02253 379 Pfam Homeobox associated leucine zipper 283 317 IPR003106 GO:0006355|GO:0043565
Cme04g02253 379 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 64 365 - -
Cme04g02253 379 Pfam Homeodomain 227 281 IPR001356 GO:0003677
Cme04g02253 379 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Cme04g02253 379 SUPERFAMILY Homeodomain-like 211 284 IPR009057 -
Cme04g02253 379 Coils Coil 289 319 - -
Cme04g02253 379 MobiDBLite consensus disorder prediction 58 91 - -
Cme04g02253 379 MobiDBLite consensus disorder prediction 63 77 - -
Cme04g02253 379 ProSiteProfiles 'Homeobox' domain profile. 223 283 IPR001356 GO:0003677
Cme04g02253 379 MobiDBLite consensus disorder prediction 1 22 - -
Cme04g02253 379 CDD homeodomain 227 284 IPR001356 GO:0003677
Cme04g02253 379 PANTHER - 64 365 - -
Cme04g02253 379 Gene3D - 231 281 - -
Cme04g02253 379 SMART HOX_1 225 287 IPR001356 GO:0003677
Cme04g02253 379 SMART halz 283 326 IPR003106 GO:0006355|GO:0043565
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01633 Cme-Chr2:23497078 Cme04g02253 Cme-Chr4:29613050 2.47E-52 dispersed
Cme04g01689 Cme-Chr4:24192692 Cme04g02253 Cme-Chr4:29613050 2.50E-53 dispersed
Cme04g02253 Cme-Chr4:29613050 Cme08g00681 Cme-Chr8:4509619 2.77E-72 dispersed
Cme01g02508 Cme-Chr1:33076673 Cme04g02253 Cme-Chr4:29613050 2.73E-84 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41254 PF00046 Homeodomain 4.40E-15 CL0123 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02253 K09338 - csv:101222778 518.079