Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02253 | ATGGTGGAGTTGGGTTTGAGCCTTGGTGATCATCCATCTTCCAATTCCAATAATAATACTAATAAGCCGTTTTCTAATTTTCTATCTAAACCAATTTCTTCTTCTTCTAATTCTTCTTCCTCTCTTATGGCTTTGGGGTTTTGTGTTGGTTTAATCGGACGTCATTCTGCTTCTGCTTCTGCTTCGGTTCAAGATGATGAAGAAGATGATGATGAGCTGGATGATGATGATGATCGGAAAACGGTTCTTGCCGGTTCAACTTCCGGTTTGGATCCACCGGTTCAGCTTGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCTTCTTCTCCCCTGCTTCCTTTCCCATGGCTTTCTCATCACTTGATGGGGGAAGTCGGGGGGAGTTCAGAGGGAGGAGAAAGGGTAGAGACATTGGATGTGAAGAGGGTGCTGGTGGAGGAGAGAGAAGATAGGGTGGCGGCGGTGGCAGTGGCGGCGTTGTCGTCTCCGAACAGTACGGTGTCATGTTTTGAAATGGAATTTGGAGGAGGAGGAGGAGGAGGGATTAGAAGGAAGAGATCATGGGATCATATGGAAATGGAAACGGAAAGAGGAGGAGGATCAGGAGGAGGTTGTTCAAGAATAATGAGTGATGATGAAGATAACAATGCTTCTGCTTCTGCTGCTGCTCGTAAAAAGCTTCGACTTTCTAAACAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTCTTAATCCTAAGCAGAAGCTAGCACTAGCAAAGCAGCTAAACCTCCGACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGAAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCTTTTTATATGCAACTTCCAGCCACTACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCTACCACCACCACCACTACCACCACCGCTCCCACCACCCCCGCCCCGTCCTCCGCTCTCTGTCTCGCTAACAAACCCAAGATCTTGCCATTTCCTCATCTGCATCAGGCTGCTTCATGA | 1140 | 46.05 | MVELGLSLGDHPSSNSNNNTNKPFSNFLSKPISSSSNSSSSLMALGFCVGLIGRHSASASASVQDDEEDDDELDDDDDRKTVLAGSTSGLDPPVQLDLLPLAPVPRSSSSSSPLLPFPWLSHHLMGEVGGSSEGGERVETLDVKRVLVEEREDRVAAVAVAALSSPNSTVSCFEMEFGGGGGGGIRRKRSWDHMEMETERGGGSGGGCSRIMSDDEDNNASASAAARKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTTTTTTAPTTPAPSSALCLANKPKILPFPHLHQAAS | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29613050 | 29615641 | + | MELO3C009614.2.1 | Cme04g02253 | 326514 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02253 | 379 | Pfam | Homeobox associated leucine zipper | 283 | 317 | IPR003106 | GO:0006355|GO:0043565 | |
Cme04g02253 | 379 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 64 | 365 | - | - | |
Cme04g02253 | 379 | Pfam | Homeodomain | 227 | 281 | IPR001356 | GO:0003677 | |
Cme04g02253 | 379 | ProSitePatterns | 'Homeobox' domain signature. | 258 | 281 | IPR017970 | GO:0000981|GO:0006355 | |
Cme04g02253 | 379 | SUPERFAMILY | Homeodomain-like | 211 | 284 | IPR009057 | - | |
Cme04g02253 | 379 | Coils | Coil | 289 | 319 | - | - | |
Cme04g02253 | 379 | MobiDBLite | consensus disorder prediction | 58 | 91 | - | - | |
Cme04g02253 | 379 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
Cme04g02253 | 379 | ProSiteProfiles | 'Homeobox' domain profile. | 223 | 283 | IPR001356 | GO:0003677 | |
Cme04g02253 | 379 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cme04g02253 | 379 | CDD | homeodomain | 227 | 284 | IPR001356 | GO:0003677 | |
Cme04g02253 | 379 | PANTHER | - | 64 | 365 | - | - | |
Cme04g02253 | 379 | Gene3D | - | 231 | 281 | - | - | |
Cme04g02253 | 379 | SMART | HOX_1 | 225 | 287 | IPR001356 | GO:0003677 | |
Cme04g02253 | 379 | SMART | halz | 283 | 326 | IPR003106 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01633 | Cme-Chr2:23497078 | Cme04g02253 | Cme-Chr4:29613050 | 2.47E-52 | dispersed | |
Cme04g01689 | Cme-Chr4:24192692 | Cme04g02253 | Cme-Chr4:29613050 | 2.50E-53 | dispersed | |
Cme04g02253 | Cme-Chr4:29613050 | Cme08g00681 | Cme-Chr8:4509619 | 2.77E-72 | dispersed | |
Cme01g02508 | Cme-Chr1:33076673 | Cme04g02253 | Cme-Chr4:29613050 | 2.73E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41254 | PF00046 | Homeodomain | 4.40E-15 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02253 | K09338 | - | csv:101222778 | 518.079 |