Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02311 | ATGAACTCCCCCTCGGACTCCGGCGGCGGCGACATCGGTAGTTTCCCCTTCATCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCTCCAGCAGGAGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCGCGAATGGTTGTTCGATTTGTTTGGTGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGACTGTGGCCATCTGTTTCACGGTAGTTGTATTGATCCATGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCACTACCGACGCCGATCTCCACCCCTTTGGCGGAGGTCGTTCCGTTGGCCATCGGAAGAAGTTGA | 489 | 52.56 | MNSPSDSGGGDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRRDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCGHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30059626 | 30060199 | - | MELO3C009554.2.1 | Cme04g02311 | 326572 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02311 | 162 | SMART | ring_2 | 97 | 138 | IPR001841 | - | |
Cme04g02311 | 162 | ProSiteProfiles | Zinc finger RING-type profile. | 97 | 139 | IPR001841 | - | |
Cme04g02311 | 162 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 10 | 160 | - | - | |
Cme04g02311 | 162 | SUPERFAMILY | RING/U-box | 71 | 144 | - | - | |
Cme04g02311 | 162 | CDD | RING-H2_PA-TM-RING | 97 | 139 | - | - | |
Cme04g02311 | 162 | Pfam | Ring finger domain | 97 | 139 | IPR001841 | - | |
Cme04g02311 | 162 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 143 | IPR013083 | - | |
Cme04g02311 | 162 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 10 | 160 | IPR045899 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02311 | Cme-Chr4:30059626 | Cme05g01679 | Cme-Chr5:25794939 | 3.34E-20 | dispersed | |
Cme03g00057 | Cme-Chr3:825441 | Cme04g02311 | Cme-Chr4:30059626 | 4.66E-11 | transposed | |
Cme06g00146 | Cme-Chr6:887966 | Cme04g02311 | Cme-Chr4:30059626 | 1.41E-32 | transposed | |
Cme04g02311 | Cme-Chr4:30059626 | Cme08g01150 | Cme-Chr8:8111962 | 2.76E-49 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02311 | - | - | mdm:103454174 | 179.874 |