Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02311 ATGAACTCCCCCTCGGACTCCGGCGGCGGCGACATCGGTAGTTTCCCCTTCATCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCTCCAGCAGGAGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCGCGAATGGTTGTTCGATTTGTTTGGTGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGACTGTGGCCATCTGTTTCACGGTAGTTGTATTGATCCATGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCACTACCGACGCCGATCTCCACCCCTTTGGCGGAGGTCGTTCCGTTGGCCATCGGAAGAAGTTGA 489 52.56 MNSPSDSGGGDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRRDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCGHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 30059626 30060199 - MELO3C009554.2.1 Cme04g02311 326572
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02311 162 SMART ring_2 97 138 IPR001841 -
Cme04g02311 162 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Cme04g02311 162 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 10 160 - -
Cme04g02311 162 SUPERFAMILY RING/U-box 71 144 - -
Cme04g02311 162 CDD RING-H2_PA-TM-RING 97 139 - -
Cme04g02311 162 Pfam Ring finger domain 97 139 IPR001841 -
Cme04g02311 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 143 IPR013083 -
Cme04g02311 162 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 160 IPR045899 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02311 Cme-Chr4:30059626 Cme05g01679 Cme-Chr5:25794939 3.34E-20 dispersed
Cme03g00057 Cme-Chr3:825441 Cme04g02311 Cme-Chr4:30059626 4.66E-11 transposed
Cme06g00146 Cme-Chr6:887966 Cme04g02311 Cme-Chr4:30059626 1.41E-32 transposed
Cme04g02311 Cme-Chr4:30059626 Cme08g01150 Cme-Chr8:8111962 2.76E-49 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02311 - - mdm:103454174 179.874