Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02317 ATGAACGATTTATTCTCCTCTCGCTCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAACGACTTTACTCCAACCTTCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGACTGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTTAAGAAGGCTAAACTCATCAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGCCTCCCTGGTTGTGGTCCTGGTTCCTCTTCTGATCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAGTTGCAGGATTCTATGGAGAGTTTTAACAATCTTAGGCAACAGATCTCCTCTGAGTACAGGGAGACCGTTCAGCGAAGATATTACACTGTTACTGGTGAAAATCCGGACGAGAAAACCATTGATGTCTTGATATCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTGAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCATGGACATGGCAGTTTTGGTGCACGAACAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGTGGCACGCAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTTTGCTGCTCATTGTCTTGTTTAGACATGAAGAGATATTACTTCAAATAAAAATAAAAGTCTTGTCGGATTCGGAGGGTGGGAACGTACAAAAGAACCAATCGGAGAAATCTCCATGGTTGAATCCGGCGGGAGAGAACCGGCGACCGGCTAATCCATTGCATATTCGAGGTCGTCTTCCTTACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAACCGCATCTTTCTAGCTCTTCTCTCGCTTTCCTCCACCATGGCAACACTGCGAATGATAGATGGTATGTTCAGAGGAATTTACCATGGTAAGCAATACCACGCAGCTGACATCGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCGGAAACTGATGGAAGGCTTTTTTGTACTGTGGGTGTGCATCCAACTAGGTGCAAGGAGTTTGAAGAGAGTGGTGACCCAGAGACATATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGGTCGTTGCAGTTGGTGAATGTGGATTAGATTATGACAGGCTTCACTTTTGCCCTGCTGATATTCAAAAGAAGTATTTCGAGAAGCAGTTTGAATTAGCACATACAACAAAGCTTCCTATGTTTCTACACATGCGTGCAGCTGCTGAAGATTTTTGTGATATTGTAGAGCGAAATAAGCAAAGGTCAGACCTCTAA 1599 45.59 MNDLFSSRSFSRDTHVVEMGNNASSSPTAVNLDKFFEDVESVKDELKELERLYSNLHDSHEQSKTLHNAKTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLLIVLFRHEEILLQIKIKVLSDSEGGNVQKNQSEKSPWLNPAGENRRPANPLHIRGRLPYQFEPISSKFKSNRIFLALLSLSSTMATLRMIDGMFRGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRSDL 532
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 30097548 30102619 - MELO3C009548.2.1 Cme04g02317 326578
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02317 532 Pfam TatD related DNase 388 528 IPR001130 GO:0016788
Cme04g02317 532 ProSitePatterns TatD deoxyribonuclease family signature 2. 507 517 IPR018228 -
Cme04g02317 532 Gene3D - 30 162 - -
Cme04g02317 532 SMART SynN_4 27 153 IPR006011 GO:0016020
Cme04g02317 532 Coils Coil 32 59 - -
Cme04g02317 532 CDD TatD_DNAse 388 527 IPR001130 GO:0016788
Cme04g02317 532 MobiDBLite consensus disorder prediction 307 321 - -
Cme04g02317 532 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Cme04g02317 532 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Cme04g02317 532 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme04g02317 532 Gene3D - 367 531 - -
Cme04g02317 532 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 301 - -
Cme04g02317 532 CDD SynN 32 189 IPR006011 GO:0016020
Cme04g02317 532 SMART tSNARE_6 197 264 IPR000727 -
Cme04g02317 532 SUPERFAMILY Metallo-dependent hydrolases 387 527 IPR032466 -
Cme04g02317 532 Gene3D - 199 290 - -
Cme04g02317 532 PANTHER SYNTAXIN 9 301 IPR045242 -
Cme04g02317 532 Coils Coil 205 225 - -
Cme04g02317 532 Pfam SNARE domain 238 288 IPR000727 -
Cme04g02317 532 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Cme04g02317 532 Coils Coil 127 151 - -
Cme04g02317 532 MobiDBLite consensus disorder prediction 307 332 - -
Cme04g02317 532 CDD SNARE_syntaxin1-like 201 263 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02317 Cme-Chr4:30097548 Cme11g00777 Cme-Chr11:9709170 2.29E-58 dispersed
Cme08g02007 Cme-Chr8:25241527 Cme04g02317 Cme-Chr4:30097548 5.44E-77 transposed
Cme12g01397 Cme-Chr12:21851130 Cme04g02317 Cme-Chr4:30097548 7.04E-120 transposed
Cme04g02317 Cme-Chr4:30097548 Cme08g01151 Cme-Chr8:8134579 1.99E-141 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02317 K08486 - csv:101208931 543.888