Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02317 ATGAACGATTTATTCTCCTCTCGCTCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAACGACTTTACTCCAACCTTCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGACTGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTTAAGAAGGCTAAACTCATCAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGCCTCCCTGGTTGTGGTCCTGGTTCCTCTTCTGATCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAGTTGCAGGATTCTATGGAGAGTTTTAACAATCTTAGGCAACAGATCTCCTCTGAGTACAGGGAGACCGTTCAGCGAAGATATTACACTGTTACTGGTGAAAATCCGGACGAGAAAACCATTGATGTCTTGATATCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTGAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCATGGACATGGCAGTTTTGGTGCACGAACAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGTGGCACGCAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTTTGCTGCTCATTGTCTTGTTTAGACATGAAGAGATATTACTTCAAATAAAAATAAAAGTCTTGTCGGATTCGGAGGGTGGGAACGTACAAAAGAACCAATCGGAGAAATCTCCATGGTTGAATCCGGCGGGAGAGAACCGGCGACCGGCTAATCCATTGCATATTCGAGGTCGTCTTCCTTACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAACCGCATCTTTCTAGCTCTTCTCTCGCTTTCCTCCACCATGGCAACACTGCGAATGATAGATGGTATGTTCAGAGGAATTTACCATGGTAAGCAATACCACGCAGCTGACATCGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCGGAAACTGATGGAAGGCTTTTTTGTACTGTGGGTGTGCATCCAACTAGGTGCAAGGAGTTTGAAGAGAGTGGTGACCCAGAGACATATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGGTCGTTGCAGTTGGTGAATGTGGATTAGATTATGACAGGCTTCACTTTTGCCCTGCTGATATTCAAAAGAAGTATTTCGAGAAGCAGTTTGAATTAGCACATACAACAAAGCTTCCTATGTTTCTACACATGCGTGCAGCTGCTGAAGATTTTTGTGATATTGTAGAGCGAAATAAGCAAAGGTCAGACCTCTAA 1599 45.59 MNDLFSSRSFSRDTHVVEMGNNASSSPTAVNLDKFFEDVESVKDELKELERLYSNLHDSHEQSKTLHNAKTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLLIVLFRHEEILLQIKIKVLSDSEGGNVQKNQSEKSPWLNPAGENRRPANPLHIRGRLPYQFEPISSKFKSNRIFLALLSLSSTMATLRMIDGMFRGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRSDL 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30097548 30102619 - MELO3C009548.2.1 Cme04g02317 326578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02317 532 Pfam TatD related DNase 388 528 IPR001130 GO:0016788
Cme04g02317 532 ProSitePatterns TatD deoxyribonuclease family signature 2. 507 517 IPR018228 -
Cme04g02317 532 Gene3D - 30 162 - -
Cme04g02317 532 SMART SynN_4 27 153 IPR006011 GO:0016020
Cme04g02317 532 Coils Coil 32 59 - -
Cme04g02317 532 CDD TatD_DNAse 388 527 IPR001130 GO:0016788
Cme04g02317 532 MobiDBLite consensus disorder prediction 307 321 - -
Cme04g02317 532 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Cme04g02317 532 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Cme04g02317 532 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme04g02317 532 Gene3D - 367 531 - -
Cme04g02317 532 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 301 - -
Cme04g02317 532 CDD SynN 32 189 IPR006011 GO:0016020
Cme04g02317 532 SMART tSNARE_6 197 264 IPR000727 -
Cme04g02317 532 SUPERFAMILY Metallo-dependent hydrolases 387 527 IPR032466 -
Cme04g02317 532 Gene3D - 199 290 - -
Cme04g02317 532 PANTHER SYNTAXIN 9 301 IPR045242 -
Cme04g02317 532 Coils Coil 205 225 - -
Cme04g02317 532 Pfam SNARE domain 238 288 IPR000727 -
Cme04g02317 532 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Cme04g02317 532 Coils Coil 127 151 - -
Cme04g02317 532 MobiDBLite consensus disorder prediction 307 332 - -
Cme04g02317 532 CDD SNARE_syntaxin1-like 201 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02317 K08486 STX1B_2_3; syntaxin 1B/2/3 - csv:101208931 543.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02317 Cme-Chr4:30097548 Cme11g00777 Cme-Chr11:9709170 2.29E-58 dispersed
Cme08g02007 Cme-Chr8:25241527 Cme04g02317 Cme-Chr4:30097548 5.44E-77 transposed
Cme12g01397 Cme-Chr12:21851130 Cme04g02317 Cme-Chr4:30097548 7.04E-120 transposed
Cme04g02317 Cme-Chr4:30097548 Cme08g01151 Cme-Chr8:8134579 1.99E-141 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01671 . 8 338 SNARE and Associated Proteins AT3G24350 64.5 2.8e-102 369.0
Cme08g02007 CCT 1 309 SNARE and Associated Proteins AT1G08560 68.8 6.5e-100 360.9
Cme04g02317 . 22 280 SNARE and Associated Proteins AT3G11820 80.3 6.1e-114 407.5
Cme08g01151 . 90 349 SNARE and Associated Proteins AT3G11820 70.0 6.6e-100 360.9
Cme12g01397 . 31 281 SNARE and Associated Proteins AT3G11820 65.3 1.1e-91 333.6
Cme04g01796 CCT 30 282 SNARE and Associated Proteins AT3G11820 52.2 9.6e-67 250.8
Cme04g02317 . 31 280 SNARE and Associated Proteins AT3G52400 68.8 2.3e-90 329.3
Cme08g01151 . 67 349 SNARE and Associated Proteins AT3G52400 59.8 1.9e-84 309.7
Cme12g01397 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 5.7e-81 298.1
Cme12g01397 . 1 299 SNARE and Associated Proteins AT4G03330 67.5 5.4e-107 384.4
Cme04g02317 . 1 285 SNARE and Associated Proteins AT4G03330 56.6 5.4e-83 304.7
Cme08g01151 . 67 347 SNARE and Associated Proteins AT4G03330 54.8 1.1e-78 290.4
Cme04g01796 CCT 1 282 SNARE and Associated Proteins AT4G03330 51.4 1.7e-68 256.5
Cme12g01397 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 1.6e-127 452.6
Cme04g02317 . 1 285 SNARE and Associated Proteins AT1G61290 61.3 9.2e-91 330.5
Cme08g01151 . 67 365 SNARE and Associated Proteins AT1G61290 54.5 1.5e-80 296.6
Cme12g01397 . 1 299 SNARE and Associated Proteins AT1G11250 77.9 2.8e-124 441.8
Cme04g02317 . 1 285 SNARE and Associated Proteins AT1G11250 61.8 2.8e-92 335.5
Cme08g01151 . 67 361 SNARE and Associated Proteins AT1G11250 54.6 3.1e-83 305.4
Cme04g01796 CCT 1 305 SNARE and Associated Proteins AT3G03800 73.3 4.6e-114 407.9
Cme11g00777 . 48 325 SNARE and Associated Proteins AT3G03800 52.9 1.3e-73 273.5
Cme04g01796 CCT 1 200 SNARE and Associated Proteins AT5G08080 79.0 5.7e-82 300.8
Cme11g00777 . 30 224 SNARE and Associated Proteins AT5G08080 53.3 1.4e-43 173.3
Cme06g02454 . 1 256 SNARE and Associated Proteins AT5G16830 58.8 8.5e-75 277.3
Cme06g02454 . 1 256 SNARE and Associated Proteins AT5G46860 65.6 1.4e-79 293.1
Cme06g02454 . 1 256 SNARE and Associated Proteins AT4G17730 60.9 6.8e-74 274.2
Cme06g02454 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 4.3e-52 202.2
Cme10g01057 . 1 336 SNARE and Associated Proteins AT5G05760 64.7 3.4e-110 395.2
Cme03g01671 . 8 338 SNARE and Associated Proteins AT3G24350 64.5 2.8e-102 369.0
Cme05g01576 . 1 327 SNARE and Associated Proteins AT5G26980 75.8 5.5e-126 447.6
Cme01g02227 . 1 302 SNARE and Associated Proteins AT5G26980 66.0 3.1e-97 352.1
Cme05g01576 . 1 329 SNARE and Associated Proteins AT4G02195 63.7 3.5e-104 375.2
Cme01g02227 . 1 302 SNARE and Associated Proteins AT4G02195 67.3 1.8e-100 362.8
Cme05g01576 . 1 328 SNARE and Associated Proteins AT3G05710 74.8 7.9e-128 453.8
Cme01g02227 . 1 302 SNARE and Associated Proteins AT3G05710 63.1 6.3e-93 337.8
Cme01g00994 . 1 233 SNARE and Associated Proteins AT1G16240 73.8 2.4e-91 332.0
Cme06g02818 . 4 220 SNARE and Associated Proteins AT1G16240 65.3 1.9e-72 269.2
Cme01g00994 . 1 233 SNARE and Associated Proteins AT1G79590 73.0 1.2e-89 326.6
Cme06g02818 . 4 220 SNARE and Associated Proteins AT1G79590 65.3 4.4e-73 271.6
Cme11g02501 . 56 246 SNARE and Associated Proteins AT1G28490 71.7 1.4e-66 249.6
Cme04g02538 . 1 264 SNARE and Associated Proteins AT3G09740 78.6 4.9e-112 401.0
Cme04g02539 . 1 264 SNARE and Associated Proteins AT3G09740 78.6 4.9e-112 401.0
Cme11g01790 . 1 235 SNARE and Associated Proteins AT3G09740 66.2 5.4e-79 291.2
Cme04g02538 . 1 264 SNARE and Associated Proteins AT3G45280 64.8 1.1e-87 320.1
Cme04g02539 . 1 264 SNARE and Associated Proteins AT3G45280 64.8 1.1e-87 320.1
Cme11g01790 . 1 237 SNARE and Associated Proteins AT3G45280 64.0 2.8e-75 278.9
Cme04g02538 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 6.9e-95 344.0
Cme04g02539 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 6.9e-95 344.0
Cme11g01790 . 1 235 SNARE and Associated Proteins AT3G61450 60.6 1.4e-74 276.6
Cme03g00216 . 65 308 SNARE and Associated Proteins AT1G51740 74.0 1.2e-93 339.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002313 5 3 2 3 3 1 2 1 1 2 1 2 2 2 2 2 2 2 3 1 3 2 2 2 3 1 2 3 2 0 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02317 Cme_Chr04 FPKM 56.149868 67.088974 14.308342 13.81074 15.675894 14.321303 14.434251 1.533497 0.844205 0.937505