Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02317 | ATGAACGATTTATTCTCCTCTCGCTCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAACGACTTTACTCCAACCTTCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGACTGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTTAAGAAGGCTAAACTCATCAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGCCTCCCTGGTTGTGGTCCTGGTTCCTCTTCTGATCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAGTTGCAGGATTCTATGGAGAGTTTTAACAATCTTAGGCAACAGATCTCCTCTGAGTACAGGGAGACCGTTCAGCGAAGATATTACACTGTTACTGGTGAAAATCCGGACGAGAAAACCATTGATGTCTTGATATCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTGAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCATGGACATGGCAGTTTTGGTGCACGAACAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGTGGCACGCAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTTTGCTGCTCATTGTCTTGTTTAGACATGAAGAGATATTACTTCAAATAAAAATAAAAGTCTTGTCGGATTCGGAGGGTGGGAACGTACAAAAGAACCAATCGGAGAAATCTCCATGGTTGAATCCGGCGGGAGAGAACCGGCGACCGGCTAATCCATTGCATATTCGAGGTCGTCTTCCTTACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAACCGCATCTTTCTAGCTCTTCTCTCGCTTTCCTCCACCATGGCAACACTGCGAATGATAGATGGTATGTTCAGAGGAATTTACCATGGTAAGCAATACCACGCAGCTGACATCGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCGGAAACTGATGGAAGGCTTTTTTGTACTGTGGGTGTGCATCCAACTAGGTGCAAGGAGTTTGAAGAGAGTGGTGACCCAGAGACATATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGGTCGTTGCAGTTGGTGAATGTGGATTAGATTATGACAGGCTTCACTTTTGCCCTGCTGATATTCAAAAGAAGTATTTCGAGAAGCAGTTTGAATTAGCACATACAACAAAGCTTCCTATGTTTCTACACATGCGTGCAGCTGCTGAAGATTTTTGTGATATTGTAGAGCGAAATAAGCAAAGGTCAGACCTCTAA | 1599 | 45.59 | MNDLFSSRSFSRDTHVVEMGNNASSSPTAVNLDKFFEDVESVKDELKELERLYSNLHDSHEQSKTLHNAKTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLLIVLFRHEEILLQIKIKVLSDSEGGNVQKNQSEKSPWLNPAGENRRPANPLHIRGRLPYQFEPISSKFKSNRIFLALLSLSSTMATLRMIDGMFRGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRSDL | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30097548 | 30102619 | - | MELO3C009548.2.1 | Cme04g02317 | 326578 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02317 | 532 | Pfam | TatD related DNase | 388 | 528 | IPR001130 | GO:0016788 | |
| Cme04g02317 | 532 | ProSitePatterns | TatD deoxyribonuclease family signature 2. | 507 | 517 | IPR018228 | - | |
| Cme04g02317 | 532 | Gene3D | - | 30 | 162 | - | - | |
| Cme04g02317 | 532 | SMART | SynN_4 | 27 | 153 | IPR006011 | GO:0016020 | |
| Cme04g02317 | 532 | Coils | Coil | 32 | 59 | - | - | |
| Cme04g02317 | 532 | CDD | TatD_DNAse | 388 | 527 | IPR001130 | GO:0016788 | |
| Cme04g02317 | 532 | MobiDBLite | consensus disorder prediction | 307 | 321 | - | - | |
| Cme04g02317 | 532 | Pfam | Syntaxin | 34 | 237 | IPR006011 | GO:0016020 | |
| Cme04g02317 | 532 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 202 | 264 | IPR000727 | - | |
| Cme04g02317 | 532 | ProSitePatterns | Syntaxin / epimorphin family signature. | 208 | 247 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cme04g02317 | 532 | Gene3D | - | 367 | 531 | - | - | |
| Cme04g02317 | 532 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 301 | - | - | |
| Cme04g02317 | 532 | CDD | SynN | 32 | 189 | IPR006011 | GO:0016020 | |
| Cme04g02317 | 532 | SMART | tSNARE_6 | 197 | 264 | IPR000727 | - | |
| Cme04g02317 | 532 | SUPERFAMILY | Metallo-dependent hydrolases | 387 | 527 | IPR032466 | - | |
| Cme04g02317 | 532 | Gene3D | - | 199 | 290 | - | - | |
| Cme04g02317 | 532 | PANTHER | SYNTAXIN | 9 | 301 | IPR045242 | - | |
| Cme04g02317 | 532 | Coils | Coil | 205 | 225 | - | - | |
| Cme04g02317 | 532 | Pfam | SNARE domain | 238 | 288 | IPR000727 | - | |
| Cme04g02317 | 532 | SUPERFAMILY | t-snare proteins | 31 | 257 | IPR010989 | GO:0016020|GO:0016192 | |
| Cme04g02317 | 532 | Coils | Coil | 127 | 151 | - | - | |
| Cme04g02317 | 532 | MobiDBLite | consensus disorder prediction | 307 | 332 | - | - | |
| Cme04g02317 | 532 | CDD | SNARE_syntaxin1-like | 201 | 263 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02317 | Cme-Chr4:30097548 | Cme11g00777 | Cme-Chr11:9709170 | 2.29E-58 | dispersed | |
| Cme08g02007 | Cme-Chr8:25241527 | Cme04g02317 | Cme-Chr4:30097548 | 5.44E-77 | transposed | |
| Cme12g01397 | Cme-Chr12:21851130 | Cme04g02317 | Cme-Chr4:30097548 | 7.04E-120 | transposed | |
| Cme04g02317 | Cme-Chr4:30097548 | Cme08g01151 | Cme-Chr8:8134579 | 1.99E-141 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02317 | K08486 | - | csv:101208931 | 543.888 |