Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02322 ATGGATGAACAAATCGAAGTCCCACACTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGTATCACCTACGATCGCCACTCCATTGAAACTTGGCTCTTCTCCGGCAAAAACTCCTCCTGTCCCATCACTAAACTCCCCGTCTCCCTCTCCGATTCCGATCTCCTCACCCCCAATCACACCCTCCGCCGTCTCATCCAAGCTTGGTGTACTTTGAACTCCTCCTATGGCGTCGAACGTTTCCCCACTCCTAAACCCCCCATTCATAAATCCCAAATCCTTCACATTATTTCCACTTCCAACACTTCCCCTTCTTCCCTAATCTCCTCCATTCGCCGTCTCCGCTCCATTTCCGCCGAGTCTGAAACTAATCGCCGATGCGTTGAATTCGCCGGTGCGCCGGAGTTTTTAGTCTCTGTTATTGTGGATTCTGATTCCTCTGCTTCTCATGAAGCCCTCTCCACTCTGCATAACCTCCGTCTCTCTGATTCAACGTTTAAATCATTGGCTACCCATCCTGAAGTCCTCGAGTCCTTGACCGATTTCATGAAATTACAACAGGGTACTCATGAATCGTCCAGAACGTACGCGGTGTTGATTTTGAAATCGATTGTTGAAGTCGCTGACCCAATTCAACTAAGCTTCTTGAAACCCGAATTGTTTGTGCAAATCGTTGAGATTTTGAAAGATCGATCATCCTCTCTACAGATTTTCAAAGCGGCATTGGGTATTTTGATCGCGGTGAGTCCATTGGGGAGAAACAGACTGAAGGCAGTGGAAGCAGGTGGGGTTGGGGCTTTGGTTGAGATTTTATTGTCGTCGCCGGAAAAAAGAGTATGTGAAATGACATTGACGGCGATGGATTTACTGTGTGGGTGTGCGGATGGAAGAGCGGCGCTGTTGGCACACGGCGGAGGGATGGCGGTGGTTTCGAAGAAGATATTGAGAGTGTCGCAATTGGGGAGTGAAAGGGCGGTAAGGATATTGTATTCGGTGGCTAAATTCTCAGGAAGTCCTGCGGTGTTGATGGAAATGGCGCAATTGGGGATTGTGGCAAAGCTGTGTTTGGTTATGCAAATTGAAAATGGAAGCAAGACGAAGGAGAAAGCTAAAGAGATTTTGAAAATGCATTCTCGTGTTTGGAAGAACTCACCTTGTATTCCTTCTAAATTGGCTTCTTCATATCCTACAAATTAA 1221 47.34 MDEQIEVPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSGKNSSCPITKLPVSLSDSDLLTPNHTLRRLIQAWCTLNSSYGVERFPTPKPPIHKSQILHIISTSNTSPSSLISSIRRLRSISAESETNRRCVEFAGAPEFLVSVIVDSDSSASHEALSTLHNLRLSDSTFKSLATHPEVLESLTDFMKLQQGTHESSRTYAVLILKSIVEVADPIQLSFLKPELFVQIVEILKDRSSSLQIFKAALGILIAVSPLGRNRLKAVEAGGVGALVEILLSSPEKRVCEMTLTAMDLLCGCADGRAALLAHGGGMAVVSKKILRVSQLGSERAVRILYSVAKFSGSPAVLMEMAQLGIVAKLCLVMQIENGSKTKEKAKEILKMHSRVWKNSPCIPSKLASSYPTN 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30163072 30164555 - MELO3C009543.2.1 Cme04g02322 326583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02322 406 CDD RING-Ubox_PUB 11 53 IPR045210 -
Cme04g02322 406 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Cme04g02322 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 404 - -
Cme04g02322 406 SUPERFAMILY ARM repeat 102 372 IPR016024 -
Cme04g02322 406 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Cme04g02322 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Cme04g02322 406 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
Cme04g02322 406 SUPERFAMILY RING/U-box 4 85 - -
Cme04g02322 406 Gene3D - 104 384 IPR011989 -
Cme04g02322 406 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02322 Cme-Chr4:30163072 Cme06g00308 Cme-Chr6:1875354 2.05E-64 dispersed
Cme06g01339 Cme-Chr6:11432445 Cme04g02322 Cme-Chr4:30163072 1.57E-59 transposed
Cme06g01534 Cme-Chr6:14946355 Cme04g02322 Cme-Chr4:30163072 2.18E-57 transposed
Cme07g00440 Cme-Chr7:2979812 Cme04g02322 Cme-Chr4:30163072 1.24E-57 transposed
Cme08g02024 Cme-Chr8:25461875 Cme04g02322 Cme-Chr4:30163072 3.56E-149 transposed
Cme04g02322 Cme-Chr4:30163072 Cme05g00240 Cme-Chr5:1752969 6.73E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02322 - - csv:101208445 724.931