Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02323 ATGGCGACTTACCTTCATGGCAATTCTGATCAATTCCAATCCTCTGATGGCGGCCTTCAAACCCTTGTCTTAATGAATCCAACCTATGTTCAATTCTCCGATACCCCTCCGCCTCCTCCTCCTCCTCCTTCCCACCCTAATCTCGTCTTCTTCAATTCCCCTACTTCCGCTGCTAATACCTTCACTGCACTCACACAAGCGCCTCCTTCGTCTCATACCCAACAGTTCGTTGGAATTCCATTACAGACGACATCCGCCGCTTCCCCTACATCCCAAGACCATAATTCGCATCCTTTGAATCCTCACCATGATATCTCTGCTTTGCACGGCTTTGTTCCGCGCCTTCAGCATAATATTTGGAACCAAATTGATCCTTCCACGGCGGCGCGTGAGTCTGCACGTGCTCAACAGGGCCTGTCTTTGACCCTTTCTTCTCAACATCAGCAAGGCTTTGGGTCGAGAGATGTTCAATCGCAGACCCAACAAGCGGTTTCTGGTGAGGAGAACATGCGAATCTCCGGCGGATCGAGTTCTTCGGCTTCCGGTGTAACCAATGGTGTGGCTGGAATTCAGGGTGTTTTGATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAAGTTGTTAATGTCACCCAAAATGGAATTAAAAGTGAATCATCTCCAAAGAAGGCTACTGGAAATCAATCGAAGGCGATCGGAGATGCAGCCGCTGCGACCGGAACTGCAGATGGTTCTTTAGAAGGTGAAACCGACGGTAAACGAGCCGCCGAGCTTACAACCTCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGAAGAGGTGGAACAAAGATACCGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCCGCTGGAGCCGGTTCGGCGAGAACCTACACCGCGCTTGCACTTCAGACGATTTCGAAGCAATTCCGCTGCTTAAAAGACGCAATTACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCACGGTTGAAATTCGTCGATCACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGTATGATTCAACACAATGCTTGGAGACCCCAGAGAGGCTTACCCGAGAGATCTGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCCGATAAACACATGCTCGCTAAGCAAACAGGGCTCACAAGAAGTCAGGTTTCGAATTGGTTCATAAACGCGAGAGTTCGACTATGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAAGAGCAAGAACAGAACGGCAACGGATCGACACCGACAACAGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCGGAAACAAAAAGCCCCAATTCAAAACAAGAAAACTCTCCAAATCAAAACGTTCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGTAACTCATCTGGATTTACACTCATCGGAACCTCATCGGAACTCGACGGAATCACACAAGGAAGCCCGAAAAAACAGAGAGGCCCAGACATCCTTCATTCCTCAAACAACAACGTGCCTTTCATAAACATGGACATCAAACCTCGAGAAGAAGAAGAACATCAAAATCAAACTCACAATCCCCATCATAATAATCATCACCATCATCTTCCAATGAAATTCGATGAAGATAGACAAAACAGAGATGGGTATTCATTTTTAGGCCAACCCCATTTCAACATCGGCGGATTTGGCCAATACCCAATCGGAGAAATCGCTAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCGTTAACTCTAGGCCTTCCCCATTGCGAAAATCTCTCCTTAAACCCAGCTACCCACCAAAGCTTCCTCCCCAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCAGCCATTAACGCTTCTACAGCTCATTCTTCCACTGCTTTTGATACCATCAACATTCAAAATGGAAAAAGGTTTGCTGCTCAATTACTTCCAGATTTTGTGGCCTAA 2142 46.59 MATYLHGNSDQFQSSDGGLQTLVLMNPTYVQFSDTPPPPPPPPSHPNLVFFNSPTSAANTFTALTQAPPSSHTQQFVGIPLQTTSAASPTSQDHNSHPLNPHHDISALHGFVPRLQHNIWNQIDPSTAARESARAQQGLSLTLSSQHQQGFGSRDVQSQTQQAVSGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKSESSPKKATGNQSKAIGDAAAATGTADGSLEGETDGKRAAELTTSERQEIQMKKAKLISMLEEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGNGSTPTTEKSNDDSVSKSIAPPPETKSPNSKQENSPNQNVHPSISISNSSGGNVRNSSGFTLIGTSSELDGITQGSPKKQRGPDILHSSNNNVPFINMDIKPREEEEHQNQTHNPHHNNHHHHLPMKFDEDRQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNPATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFDTINIQNGKRFAAQLLPDFVA 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30173085 30176223 - MELO3C009542.2.1 Cme04g02323 326584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02323 713 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 16 663 - -
Cme04g02323 713 MobiDBLite consensus disorder prediction 455 533 - -
Cme04g02323 713 MobiDBLite consensus disorder prediction 84 105 - -
Cme04g02323 713 MobiDBLite consensus disorder prediction 558 573 - -
Cme04g02323 713 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Cme04g02323 713 SMART prehox3 188 334 IPR006563 -
Cme04g02323 713 MobiDBLite consensus disorder prediction 217 262 - -
Cme04g02323 713 Coils Coil 266 293 - -
Cme04g02323 713 CDD homeodomain 382 443 IPR001356 GO:0003677
Cme04g02323 713 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Cme04g02323 713 MobiDBLite consensus disorder prediction 453 583 - -
Cme04g02323 713 SMART HOX_1 382 446 IPR001356 GO:0003677
Cme04g02323 713 Gene3D - 385 462 - -
Cme04g02323 713 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Cme04g02323 713 MobiDBLite consensus disorder prediction 130 183 - -
Cme04g02323 713 Pfam Associated with HOX 193 333 IPR006563 -
Cme04g02323 713 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 663 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02151 Cme-Chr3:28652355 Cme04g02323 Cme-Chr4:30173085 4.37E-31 dispersed
Cme03g02152 Cme-Chr3:28654706 Cme04g02323 Cme-Chr4:30173085 4.73E-49 dispersed
Cme04g02323 Cme-Chr4:30173085 Cme04g02662 Cme-Chr4:32282406 7.70E-59 dispersed
Cme01g02615 Cme-Chr1:33782094 Cme04g02323 Cme-Chr4:30173085 1.32E-84 transposed
Cme08g00510 Cme-Chr8:3146484 Cme04g02323 Cme-Chr4:30173085 1.37E-83 transposed
Cme09g01786 Cme-Chr9:22302206 Cme04g02323 Cme-Chr4:30173085 2.88E-85 transposed
Cme11g00154 Cme-Chr11:1651284 Cme04g02323 Cme-Chr4:30173085 4.14E-108 transposed
Cme11g00313 Cme-Chr11:3310166 Cme04g02323 Cme-Chr4:30173085 1.84E-83 transposed
Cme12g00421 Cme-Chr12:6337581 Cme04g02323 Cme-Chr4:30173085 6.85E-71 transposed
Cme04g02323 Cme-Chr4:30173085 Cme05g00241 Cme-Chr5:1763777 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41261 PF07526 POX 2.90E-49 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02323 - - csv:101208201 1305.04