Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02323 | ATGGCGACTTACCTTCATGGCAATTCTGATCAATTCCAATCCTCTGATGGCGGCCTTCAAACCCTTGTCTTAATGAATCCAACCTATGTTCAATTCTCCGATACCCCTCCGCCTCCTCCTCCTCCTCCTTCCCACCCTAATCTCGTCTTCTTCAATTCCCCTACTTCCGCTGCTAATACCTTCACTGCACTCACACAAGCGCCTCCTTCGTCTCATACCCAACAGTTCGTTGGAATTCCATTACAGACGACATCCGCCGCTTCCCCTACATCCCAAGACCATAATTCGCATCCTTTGAATCCTCACCATGATATCTCTGCTTTGCACGGCTTTGTTCCGCGCCTTCAGCATAATATTTGGAACCAAATTGATCCTTCCACGGCGGCGCGTGAGTCTGCACGTGCTCAACAGGGCCTGTCTTTGACCCTTTCTTCTCAACATCAGCAAGGCTTTGGGTCGAGAGATGTTCAATCGCAGACCCAACAAGCGGTTTCTGGTGAGGAGAACATGCGAATCTCCGGCGGATCGAGTTCTTCGGCTTCCGGTGTAACCAATGGTGTGGCTGGAATTCAGGGTGTTTTGATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAAGTTGTTAATGTCACCCAAAATGGAATTAAAAGTGAATCATCTCCAAAGAAGGCTACTGGAAATCAATCGAAGGCGATCGGAGATGCAGCCGCTGCGACCGGAACTGCAGATGGTTCTTTAGAAGGTGAAACCGACGGTAAACGAGCCGCCGAGCTTACAACCTCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGAAGAGGTGGAACAAAGATACCGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCCGCTGGAGCCGGTTCGGCGAGAACCTACACCGCGCTTGCACTTCAGACGATTTCGAAGCAATTCCGCTGCTTAAAAGACGCAATTACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCACGGTTGAAATTCGTCGATCACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGTATGATTCAACACAATGCTTGGAGACCCCAGAGAGGCTTACCCGAGAGATCTGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCCGATAAACACATGCTCGCTAAGCAAACAGGGCTCACAAGAAGTCAGGTTTCGAATTGGTTCATAAACGCGAGAGTTCGACTATGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAAGAGCAAGAACAGAACGGCAACGGATCGACACCGACAACAGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCGGAAACAAAAAGCCCCAATTCAAAACAAGAAAACTCTCCAAATCAAAACGTTCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGTAACTCATCTGGATTTACACTCATCGGAACCTCATCGGAACTCGACGGAATCACACAAGGAAGCCCGAAAAAACAGAGAGGCCCAGACATCCTTCATTCCTCAAACAACAACGTGCCTTTCATAAACATGGACATCAAACCTCGAGAAGAAGAAGAACATCAAAATCAAACTCACAATCCCCATCATAATAATCATCACCATCATCTTCCAATGAAATTCGATGAAGATAGACAAAACAGAGATGGGTATTCATTTTTAGGCCAACCCCATTTCAACATCGGCGGATTTGGCCAATACCCAATCGGAGAAATCGCTAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCGTTAACTCTAGGCCTTCCCCATTGCGAAAATCTCTCCTTAAACCCAGCTACCCACCAAAGCTTCCTCCCCAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCAGCCATTAACGCTTCTACAGCTCATTCTTCCACTGCTTTTGATACCATCAACATTCAAAATGGAAAAAGGTTTGCTGCTCAATTACTTCCAGATTTTGTGGCCTAA | 2142 | 46.59 | MATYLHGNSDQFQSSDGGLQTLVLMNPTYVQFSDTPPPPPPPPSHPNLVFFNSPTSAANTFTALTQAPPSSHTQQFVGIPLQTTSAASPTSQDHNSHPLNPHHDISALHGFVPRLQHNIWNQIDPSTAARESARAQQGLSLTLSSQHQQGFGSRDVQSQTQQAVSGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKSESSPKKATGNQSKAIGDAAAATGTADGSLEGETDGKRAAELTTSERQEIQMKKAKLISMLEEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGNGSTPTTEKSNDDSVSKSIAPPPETKSPNSKQENSPNQNVHPSISISNSSGGNVRNSSGFTLIGTSSELDGITQGSPKKQRGPDILHSSNNNVPFINMDIKPREEEEHQNQTHNPHHNNHHHHLPMKFDEDRQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNPATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFDTINIQNGKRFAAQLLPDFVA | 713 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30173085 | 30176223 | - | MELO3C009542.2.1 | Cme04g02323 | 326584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02323 | 713 | PANTHER | HOMEOTIC PROTEIN, PUTATIVE-RELATED | 16 | 663 | - | - | |
Cme04g02323 | 713 | MobiDBLite | consensus disorder prediction | 455 | 533 | - | - | |
Cme04g02323 | 713 | MobiDBLite | consensus disorder prediction | 84 | 105 | - | - | |
Cme04g02323 | 713 | MobiDBLite | consensus disorder prediction | 558 | 573 | - | - | |
Cme04g02323 | 713 | Pfam | Homeobox KN domain | 399 | 438 | IPR008422 | GO:0003677|GO:0006355 | |
Cme04g02323 | 713 | SMART | prehox3 | 188 | 334 | IPR006563 | - | |
Cme04g02323 | 713 | MobiDBLite | consensus disorder prediction | 217 | 262 | - | - | |
Cme04g02323 | 713 | Coils | Coil | 266 | 293 | - | - | |
Cme04g02323 | 713 | CDD | homeodomain | 382 | 443 | IPR001356 | GO:0003677 | |
Cme04g02323 | 713 | SUPERFAMILY | Homeodomain-like | 383 | 449 | IPR009057 | - | |
Cme04g02323 | 713 | MobiDBLite | consensus disorder prediction | 453 | 583 | - | - | |
Cme04g02323 | 713 | SMART | HOX_1 | 382 | 446 | IPR001356 | GO:0003677 | |
Cme04g02323 | 713 | Gene3D | - | 385 | 462 | - | - | |
Cme04g02323 | 713 | ProSiteProfiles | 'Homeobox' domain profile. | 379 | 442 | IPR001356 | GO:0003677 | |
Cme04g02323 | 713 | MobiDBLite | consensus disorder prediction | 130 | 183 | - | - | |
Cme04g02323 | 713 | Pfam | Associated with HOX | 193 | 333 | IPR006563 | - | |
Cme04g02323 | 713 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 16 | 663 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g02151 | Cme-Chr3:28652355 | Cme04g02323 | Cme-Chr4:30173085 | 4.37E-31 | dispersed | |
Cme03g02152 | Cme-Chr3:28654706 | Cme04g02323 | Cme-Chr4:30173085 | 4.73E-49 | dispersed | |
Cme04g02323 | Cme-Chr4:30173085 | Cme04g02662 | Cme-Chr4:32282406 | 7.70E-59 | dispersed | |
Cme01g02615 | Cme-Chr1:33782094 | Cme04g02323 | Cme-Chr4:30173085 | 1.32E-84 | transposed | |
Cme08g00510 | Cme-Chr8:3146484 | Cme04g02323 | Cme-Chr4:30173085 | 1.37E-83 | transposed | |
Cme09g01786 | Cme-Chr9:22302206 | Cme04g02323 | Cme-Chr4:30173085 | 2.88E-85 | transposed | |
Cme11g00154 | Cme-Chr11:1651284 | Cme04g02323 | Cme-Chr4:30173085 | 4.14E-108 | transposed | |
Cme11g00313 | Cme-Chr11:3310166 | Cme04g02323 | Cme-Chr4:30173085 | 1.84E-83 | transposed | |
Cme12g00421 | Cme-Chr12:6337581 | Cme04g02323 | Cme-Chr4:30173085 | 6.85E-71 | transposed | |
Cme04g02323 | Cme-Chr4:30173085 | Cme05g00241 | Cme-Chr5:1763777 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41261 | PF07526 | POX | 2.90E-49 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02323 | - | - | csv:101208201 | 1305.04 |