Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02367 ATGTCCATAAACAACTTCTCTCCTGACTTCCATCAACCTCTTTTCTCTACTTCTCAACTCCCCATCATGCTCAACCCCAAATCCTCCCTCTCCCTCGCCGTCACCGCCGACCATCTCCCCATGTTCGAGAAACCCTTAACCCCCAGCGACGTTGGCAAACTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTTCCCCTCTCACCCTCCGCCGCGGTCGCCACCGCCGCCGCTGCCGCCGGTGACTCTGCCGATAAGGGGTTGCTCCTTAGCTTTGAAGATGAGTCCGGAAAAATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACCAAAGGGTGGAGCCGGTTTGTTAAAGAGAAGCGGCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGACGGTGATAGGTTGTTCATTGGGTGGAAAAGGAGGTCGGCACCGTCTCCGGCGGACAGTGCGGTGGCGACGGGGAGTGGTGGGGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTGCAAATTCATATCCTTCTCATCATCAACATCGTCATCTTCCCTCACCGCCATACCAATCTTCTTCCGATACTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGATTGGGAATTCAAAGATACTGCGGCTCTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGTTGCTCAATGTCGGGTCAAGTTTAAGTCTATCGGGTCGAGATCCAACCCGCCACACCTTCTACCCACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAACCAGACGAAATATCAAGGATAG 891 52.64 MSINNFSPDFHQPLFSTSQLPIMLNPKSSLSLAVTADHLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVATAAAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADSAVATGSGGVGGGGGWTRMFCSANSYPSHHQHRHLPSPPYQSSSDTPHAESSVQSQTVSIGNSKILRLFGVDLECQTDMSEPEPPSLLNVGSSLSLSGRDPTRHTFYPHYSSPLPHHMDFTFSQDVNQTKYQG 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30473183 30476701 + MELO3C009500.2.1 Cme04g02367 326628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02367 296 SMART B3_2 42 157 IPR003340 GO:0003677
Cme04g02367 296 CDD B3_DNA 40 146 IPR003340 GO:0003677
Cme04g02367 296 Pfam B3 DNA binding domain 42 156 IPR003340 GO:0003677
Cme04g02367 296 Gene3D - 34 166 IPR015300 -
Cme04g02367 296 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 246 IPR044800 GO:0003700
Cme04g02367 296 MobiDBLite consensus disorder prediction 190 221 - -
Cme04g02367 296 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 35 246 - -
Cme04g02367 296 SUPERFAMILY DNA-binding pseudobarrel domain 38 157 IPR015300 -
Cme04g02367 296 ProSiteProfiles B3 DNA-binding domain profile. 42 157 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02367 Cme-Chr4:30473183 Cme11g02307 Cme-Chr11:30130044 2.74E-47 dispersed
Cme04g02367 Cme-Chr4:30473183 Cme07g01632 Cme-Chr7:22077795 2.05E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41264 PF02362 B3 2.00E-30 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02367 - - csv:101214938 522.702