Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02390 CTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGA 429 42.66 LISFLVEASILPLSKTARFFDRFDCHFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30619784 30622923 + MELO3C009479.2.1 Cme04g02390 326651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02390 142 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 34 142 - -
Cme04g02390 142 Pfam Replication factor A protein 3 37 138 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cme04g02390 142 SUPERFAMILY Nucleic acid-binding proteins 41 141 IPR012340 -
Cme04g02390 142 CDD RPA3 42 141 - -
Cme04g02390 142 Gene3D - 37 142 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02390 Cme-Chr4:30619784 Cme10g00153 Cme-Chr10:1088935 8.73E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02390 K10740 - csv:101203835 203.756