Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02427 ATGGCTTCTTCTTCTGGCCGCCACCCCGTCTACCGAGGCGTTCGCCGTCGCAACACCGGCAAATGGGTCTCCGAAATCCGCGAGCCAAGGAAGCCCAACCGTATTTGGCTGGGAACTTTTCCCACCGCCGAAATGGCCGCCGTTGCTTACGACGTTGCCGCCCTTGCCCTAAAAGGCCAAGACACCGAGCTTAATTTCCCTAATTCCGCCTCGTCTCTCCCCATCCCCGCTTCTAGGTCACCATCGGATATTCAAGCGGCAGCTGCGTCTGCTGCTGCTGCTCTTGGAGCGGCTGCAGCGGCCATGGAGGCACGGAACAATAGCGGTTCTCGTCGTGGAAGTCATTCTGATGACGTCGTGTATGAAGCAAGATATGGTCAAGAATATGAATTGGAGAGTCAGTTCATGGACGAGGACTTGATCTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCATGGCGGAGACGAAGACCGCGACTTCGGCACGGACCAAAACCTTTGGAATTTTCCCTAG 552 54.17 MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDTELNFPNSASSLPIPASRSPSDIQAAAASAAAALGAAAAAMEARNNSGSRRGSHSDDVVYEARYGQEYELESQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDEDRDFGTDQNLWNFP 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30913257 30913808 - MELO3C009441.2.1 Cme04g02427 326688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02427 183 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Cme04g02427 183 Pfam AP2 domain 9 59 IPR001471 GO:0003700|GO:0006355
Cme04g02427 183 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Cme04g02427 183 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Cme04g02427 183 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Cme04g02427 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 183 - -
Cme04g02427 183 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Cme04g02427 183 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
Cme04g02427 183 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677
Cme04g02427 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02427 Cme-Chr4:30913257 Cme08g01225 Cme-Chr8:8651739 1.53E-58 dispersed
Cme04g02426 Cme-Chr4:30905402 Cme04g02427 Cme-Chr4:30913257 4.63E-32 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41269 PF00847 AP2 8.80E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02427 - - csv:101203380 316.235