Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02428 ATGGATGATCAATATCCCCTCTCCGATCTCCGCCACCTCTTGAGTACGGCTCCACCTCGTCCCCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCGCCTTTCGCCACCACCATACTCCCTACGACCTCATCATGATGATGCCACGCGACACTCCCCTCCCCGACTTTCGTTCCGATTCCACCACTACACCATCTGCTCCCATAGTCTCAGCTCAGACCGTTCACAACGCTTTCGAGCCCGAAAGCGCCTCGATCGCTGCCGACTGCGCCACAGCTCGATGGCCTCGACAAGAAACCCTTACTCTCTTGGAAATTAGATCTCGACTTGATTCTAAGTTCAAAGAAGCTAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATTATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAATTACAGATTCTTTAGGCAATTGGAAGCTCTCTATGGTGAAACAAGCAATTCTCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACAAATCTCAGATTCCAACAAAATGGGACCAAAAATCCAACCGCCTCCGCTCCGATGAGCCACGAAGCTCACCAGAAGCATTACTGCGACAGCCTTAGCCTCTCCAACACGTCCGAGTTTGAAACCTCGGCTTCATCAGATGGCAATGACGACCTCGGCTCGGTTGGCGTAATGGATAACGATTCAATGGAGAAAAGAAGGAAGAAGCGAGGCGGAAAATGCTGGAAGGCAAAAATTAAACAGTTCATCGACTCGCAAATGAGGAAGTTAATTGATAAACAAGAGGCTTGGCTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGGGACGAGGAATGGAGAAGACAAGAAGTGTCAAGAATGGATAGGGAGAGAAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAATCTAGAGATGCGGCATTAATGGATGCATTACAAAGGCTAACAGGAAGAGAATTGAGAGATAATAATCAATACAACTCCTCGCCTGACCACGGATTAATTGTAGCCGAGCATCATCGAAACAATAACGAGAATCAAAACGAAGACGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTATTAGCAGACAACAACGATAATTACCAAAGGAAAATAATTGATAATCATGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAACAACCACCACCTACAATCTTTACTTCCAACAACAAACAGATTCCTCCCTCTATAGCCGTGGCGGCGGTGGACCGTACGACGGTGCCACTCACATCAAAGAACAAAGTCCAAATAGTTCGAATGCGGGTGCCAGCGGTGGCGGCCACGTGGTGCAAGATAACTGCTTTAGGTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTGTGGGAAAATTTTGGTCTCAAACTCAACAATGGAGGTGACCGAACTTGA 1554 45.43 MDDQYPLSDLRHLLSTAPPRPHFPSSSSIPHHDLSSAFRHHHTPYDLIMMMPRDTPLPDFRSDSTTTPSAPIVSAQTVHNAFEPESASIAADCATARWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTKNPTASAPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDLGSVGVMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIRDEEWRRQEVSRMDRERSFWAKERAWIESRDAALMDALQRLTGRELRDNNQYNSSPDHGLIVAEHHRNNNENQNEDGSEILNNNTARELLADNNDNYQRKIIDNHGNKKRKENSTSTTTTTYNLYFQQQTDSSLYSRGGGGPYDGATHIKEQSPNSSNAGASGGGHVVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGGDRT 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30926897 30930247 + MELO3C009440.2.1 Cme04g02428 326689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02428 517 Gene3D - 98 160 - -
Cme04g02428 517 Coils Coil 292 319 - -
Cme04g02428 517 MobiDBLite consensus disorder prediction 464 479 - -
Cme04g02428 517 MobiDBLite consensus disorder prediction 447 479 - -
Cme04g02428 517 CDD GT1 97 162 - -
Cme04g02428 517 ProSiteProfiles Myb-like domain profile. 97 155 IPR001005 -
Cme04g02428 517 MobiDBLite consensus disorder prediction 240 271 - -
Cme04g02428 517 Pfam Myb/SANT-like DNA-binding domain 97 183 IPR044822 -
Cme04g02428 517 PANTHER - 418 504 - -
Cme04g02428 517 PANTHER - 16 403 - -
Cme04g02428 517 MobiDBLite consensus disorder prediction 416 435 - -
Cme04g02428 517 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 16 403 - -
Cme04g02428 517 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 418 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02428 Cme-Chr4:30926897 Cme10g00135 Cme-Chr10:981355 2.13E-86 dispersed
Cme04g02428 Cme-Chr4:30926897 Cme04g02727 Cme-Chr4:32646707 6.93E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41270 PF13837 Myb_DNA-bind_4 2.50E-19 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02428 - - csv:101209675 977.237