Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02435 ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTAAGTCAAATTCCAGACGACCAATACAGTGGCGGCGTTGCCGGAGCTTCGGCATCTTTCATAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTAGAAAGAGGATTGGATTGGGAAGTTGCTGGTGATCATAGGGCGGGTCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCTGGGGAATACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACAGATGCGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGAGATTCGAGAGCACAGGCAGGCGAGATGGCCGCTGGGGCAGGAGGATCTTCTGCTAAGAGCTGGGCGCAACAAACGGAGGAGAGTTATCAGCTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCGACTTGTGCTGATGATCCTAATTTCTTGAATCCATTTCATGATGATTCAGCTTTAAGGAGGCCGATAAGCTCTGCTGAGGCTGTGTCACATCGATTCTGGGTGAATGGCTGTCTATCGTACTTCGACAAAGTCCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACTGTGTGCACCAGCCTGCCTGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTTTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAAGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGACCAGCTTGCAAAACTTGTCTGCAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGACGCATTGGTGTCCATCTGGAAGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTTTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGGTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTCGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTCAATCTCCTCACCATTGCGATTTCCACGACTAAATCCAGTAGAGCCTGCCACCGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACTCAGAAATTACTTTGGATGGAGAAGACGGCGCACTCCCATTGTATCCAAAGCAGTTTGATAGGAAATTCACCAACAGAAGCAACCAAATGCTTGTCACTGGTGATGGTGATGAAAAATCCATTTTACTGCATCCAAAAACTTCACAGCCTAACTCCCATGACAGAGATTGCCAACTGTATAAACCACGTGATAATTCTCATAGTATTATTCAACCAACTGGCGTGGTTGAGGATTCAATCCCACTGAAGTACATTCCACATAATAATCGTGGAAGCATGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTTCTATGGATGTAAGGTTTGCACCGGGAGGTCAGCTAATACCAAGCACTCGGAGTAGAACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGGGTGAACTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCTTTTGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCTTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACTTGTCCATTGTCACCGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGAATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCGAATCTGTTAGTTGACAAGAAGTATACAGTCAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCTGCAGCTGGAACACCTGAATGGATGGCACCAGAAGTACTACGTGATGAACCATCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTCGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCATGGAAACGTCCTTCTTTTTCCAGCATTATGGAAACCTTGAAACCAATGACTAAACAAGCGCCACCTCAACAAAGTCGCACGGACACCCTCTCGGTTATGTGA 2613 45.35 MEMPGRRLNYTLLSQIPDDQYSGGVAGASASFIETSSGEGKNDRRKLERGLDWEVAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDAFGCTHDDVLRIGGDSRAQAGEMAAGAGGSSAKSWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFHDDSALRRPISSAEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQSISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWKECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSISISSPLRFPRLNPVEPATDFRSLAKQYFSDCQLLNVVFDEASSCNHSEITLDGEDGALPLYPKQFDRKFTNRSNQMLVTGDGDEKSILLHPKTSQPNSHDRDCQLYKPRDNSHSIIQPTGVVEDSIPLKYIPHNNRGSMQSLLDMSQPRMDSSMDVRFAPGGQLIPSTRSRTLPLGAEDLDIPWGELVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSSIMETLKPMTKQAPPQQSRTDTLSVM 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30989682 30998292 - MELO3C009433.2.1 Cme04g02435 326696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02435 870 Gene3D Phosphorylase Kinase; domain 1 590 675 - -
Cme04g02435 870 Pfam Ethylene-responsive protein kinase Le-CTR1 193 397 - -
Cme04g02435 870 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 134 865 - -
Cme04g02435 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Cme04g02435 870 ProSitePatterns Protein kinases ATP-binding region signature. 603 624 IPR017441 GO:0005524
Cme04g02435 870 SUPERFAMILY Protein kinase-like (PK-like) 578 850 IPR011009 -
Cme04g02435 870 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 134 865 - -
Cme04g02435 870 CDD STKc_MAP3K-like 603 850 - -
Cme04g02435 870 SMART serkin_6 597 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02435 870 PRINTS Tyrosine kinase catalytic domain signature 671 684 IPR001245 GO:0004672|GO:0006468
Cme04g02435 870 PRINTS Tyrosine kinase catalytic domain signature 711 729 IPR001245 GO:0004672|GO:0006468
Cme04g02435 870 PRINTS Tyrosine kinase catalytic domain signature 758 768 IPR001245 GO:0004672|GO:0006468
Cme04g02435 870 PRINTS Tyrosine kinase catalytic domain signature 777 799 IPR001245 GO:0004672|GO:0006468
Cme04g02435 870 PRINTS Tyrosine kinase catalytic domain signature 821 843 IPR001245 GO:0004672|GO:0006468
Cme04g02435 870 Pfam Protein tyrosine and serine/threonine kinase 598 850 IPR001245 GO:0004672|GO:0006468
Cme04g02435 870 Gene3D Transferase(Phosphotransferase) domain 1 676 865 - -
Cme04g02435 870 ProSiteProfiles Protein kinase domain profile. 597 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02435 Cme08g01227 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02435 Cme-Chr4:30989682 Cme06g02352 Cme-Chr6:30841256 3.12E-70 dispersed
Cme02g00166 Cme-Chr2:1237800 Cme04g02435 Cme-Chr4:30989682 4.74E-34 transposed
Cme02g01098 Cme-Chr2:15964784 Cme04g02435 Cme-Chr4:30989682 1.47E-48 transposed
Cme04g00232 Cme-Chr4:1823102 Cme04g02435 Cme-Chr4:30989682 5.67E-65 transposed
Cme07g00188 Cme-Chr7:1277550 Cme04g02435 Cme-Chr4:30989682 1.19E-25 transposed
Cme07g00228 Cme-Chr7:1500074 Cme04g02435 Cme-Chr4:30989682 1.26E-31 transposed
Cme11g01134 Cme-Chr11:17137716 Cme04g02435 Cme-Chr4:30989682 4.42E-06 transposed
Cme11g02082 Cme-Chr11:28488715 Cme04g02435 Cme-Chr4:30989682 3.25E-103 transposed
Cme12g01838 Cme-Chr12:24732892 Cme04g02435 Cme-Chr4:30989682 3.50E-37 transposed
Cme04g02435 Cme-Chr4:30989682 Cme08g01227 Cme-Chr8:8661616 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64843 PF07714 PK_Tyr_Ser-Thr 1.70E-70 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02435 K14510 - csv:101208452 1677.53