Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02435 | ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTAAGTCAAATTCCAGACGACCAATACAGTGGCGGCGTTGCCGGAGCTTCGGCATCTTTCATAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTAGAAAGAGGATTGGATTGGGAAGTTGCTGGTGATCATAGGGCGGGTCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCTGGGGAATACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACAGATGCGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGAGATTCGAGAGCACAGGCAGGCGAGATGGCCGCTGGGGCAGGAGGATCTTCTGCTAAGAGCTGGGCGCAACAAACGGAGGAGAGTTATCAGCTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCGACTTGTGCTGATGATCCTAATTTCTTGAATCCATTTCATGATGATTCAGCTTTAAGGAGGCCGATAAGCTCTGCTGAGGCTGTGTCACATCGATTCTGGGTGAATGGCTGTCTATCGTACTTCGACAAAGTCCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACTGTGTGCACCAGCCTGCCTGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTTTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAAGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGACCAGCTTGCAAAACTTGTCTGCAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGACGCATTGGTGTCCATCTGGAAGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTTTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGGTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTCGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTCAATCTCCTCACCATTGCGATTTCCACGACTAAATCCAGTAGAGCCTGCCACCGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACTCAGAAATTACTTTGGATGGAGAAGACGGCGCACTCCCATTGTATCCAAAGCAGTTTGATAGGAAATTCACCAACAGAAGCAACCAAATGCTTGTCACTGGTGATGGTGATGAAAAATCCATTTTACTGCATCCAAAAACTTCACAGCCTAACTCCCATGACAGAGATTGCCAACTGTATAAACCACGTGATAATTCTCATAGTATTATTCAACCAACTGGCGTGGTTGAGGATTCAATCCCACTGAAGTACATTCCACATAATAATCGTGGAAGCATGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTTCTATGGATGTAAGGTTTGCACCGGGAGGTCAGCTAATACCAAGCACTCGGAGTAGAACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGGGTGAACTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCTTTTGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCTTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACTTGTCCATTGTCACCGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGAATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCGAATCTGTTAGTTGACAAGAAGTATACAGTCAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCTGCAGCTGGAACACCTGAATGGATGGCACCAGAAGTACTACGTGATGAACCATCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTCGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCATGGAAACGTCCTTCTTTTTCCAGCATTATGGAAACCTTGAAACCAATGACTAAACAAGCGCCACCTCAACAAAGTCGCACGGACACCCTCTCGGTTATGTGA | 2613 | 45.35 | MEMPGRRLNYTLLSQIPDDQYSGGVAGASASFIETSSGEGKNDRRKLERGLDWEVAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDAFGCTHDDVLRIGGDSRAQAGEMAAGAGGSSAKSWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFHDDSALRRPISSAEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQSISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWKECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSISISSPLRFPRLNPVEPATDFRSLAKQYFSDCQLLNVVFDEASSCNHSEITLDGEDGALPLYPKQFDRKFTNRSNQMLVTGDGDEKSILLHPKTSQPNSHDRDCQLYKPRDNSHSIIQPTGVVEDSIPLKYIPHNNRGSMQSLLDMSQPRMDSSMDVRFAPGGQLIPSTRSRTLPLGAEDLDIPWGELVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSSIMETLKPMTKQAPPQQSRTDTLSVM | 870 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30989682 | 30998292 | - | MELO3C009433.2.1 | Cme04g02435 | 326696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02435 | 870 | Gene3D | Phosphorylase Kinase; domain 1 | 590 | 675 | - | - | |
Cme04g02435 | 870 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 193 | 397 | - | - | |
Cme04g02435 | 870 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 134 | 865 | - | - | |
Cme04g02435 | 870 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 717 | 729 | IPR008271 | GO:0004672|GO:0006468 | |
Cme04g02435 | 870 | ProSitePatterns | Protein kinases ATP-binding region signature. | 603 | 624 | IPR017441 | GO:0005524 | |
Cme04g02435 | 870 | SUPERFAMILY | Protein kinase-like (PK-like) | 578 | 850 | IPR011009 | - | |
Cme04g02435 | 870 | PANTHER | MAP KINASE KINASE KINASE-LIKE PROTEIN | 134 | 865 | - | - | |
Cme04g02435 | 870 | CDD | STKc_MAP3K-like | 603 | 850 | - | - | |
Cme04g02435 | 870 | SMART | serkin_6 | 597 | 854 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme04g02435 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 671 | 684 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g02435 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 711 | 729 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g02435 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 758 | 768 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g02435 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 777 | 799 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g02435 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 821 | 843 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g02435 | 870 | Pfam | Protein tyrosine and serine/threonine kinase | 598 | 850 | IPR001245 | GO:0004672|GO:0006468 | |
Cme04g02435 | 870 | Gene3D | Transferase(Phosphotransferase) domain 1 | 676 | 865 | - | - | |
Cme04g02435 | 870 | ProSiteProfiles | Protein kinase domain profile. | 597 | 854 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme04g02435 | Cme08g01227 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02435 | Cme-Chr4:30989682 | Cme06g02352 | Cme-Chr6:30841256 | 3.12E-70 | dispersed | |
Cme02g00166 | Cme-Chr2:1237800 | Cme04g02435 | Cme-Chr4:30989682 | 4.74E-34 | transposed | |
Cme02g01098 | Cme-Chr2:15964784 | Cme04g02435 | Cme-Chr4:30989682 | 1.47E-48 | transposed | |
Cme04g00232 | Cme-Chr4:1823102 | Cme04g02435 | Cme-Chr4:30989682 | 5.67E-65 | transposed | |
Cme07g00188 | Cme-Chr7:1277550 | Cme04g02435 | Cme-Chr4:30989682 | 1.19E-25 | transposed | |
Cme07g00228 | Cme-Chr7:1500074 | Cme04g02435 | Cme-Chr4:30989682 | 1.26E-31 | transposed | |
Cme11g01134 | Cme-Chr11:17137716 | Cme04g02435 | Cme-Chr4:30989682 | 4.42E-06 | transposed | |
Cme11g02082 | Cme-Chr11:28488715 | Cme04g02435 | Cme-Chr4:30989682 | 3.25E-103 | transposed | |
Cme12g01838 | Cme-Chr12:24732892 | Cme04g02435 | Cme-Chr4:30989682 | 3.50E-37 | transposed | |
Cme04g02435 | Cme-Chr4:30989682 | Cme08g01227 | Cme-Chr8:8661616 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64843 | PF07714 | PK_Tyr_Ser-Thr | 1.70E-70 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02435 | K14510 | - | csv:101208452 | 1677.53 |