Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02439 | ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGTCCCGGAGAGGAGAAGATACTGCATCTGTCGCAGGCCTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTCCTATATGTCAAGGTTGGCAATCAAAAACTTGTTCTTGGGACACTATCCTCGGAGAAATTCCCACAAGTGTCTTTTGACCTGGTGTTTGACAAAGAATTTGAGCTATCTCATAATTGGAAAAATGGAAGCGTGCACTTTACAGGATATACATCTCTCCTTCCAGAAGAGGAGGAATCTACTTATACTGATTCTGAAGAGGATTTTCCTCTAGCTGTCACTGACAATGGAAAGCCAGAGCCAGAGCCTAAGAAAGATGCAAAGCCTGATACTTCCGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGTTGCCTCTAATTCAAATATTGACAGTAAGAAGAATGAAGACAGTTCTGATGAAGATGATGACGAGGATGAGGAGAGCACAGATGATGAGAATGAAAATGGAGGTGAAGAAGATGATACCGATGATGACGAAAATGAGTCTTCTGGAGTCGATAGCGAAGACTCTGATGAGGACTCGGATGACAGTTTGGAAGAGGACGAGCAGACACCTAAAAAGGCTGAAGCAAGCAAGAAGAGGCCTTTAGATTCTGCTAATAAAACGCCTGCTCCTGATAAGAAGGCAAAACTCGTCACTCCTCAGAAGACTGATGGCAAGAAAGGCGTTGCTCATGTAGATACTCCTCATCCTTCAAAGAAGGCCGGGAAAATGCCTGCTGCTAATGACAAAACTAAACAGCAGACTCCCAAATCAGCAAATGCCGCATTCCCTTGCAAAACTTGCAACAGGACATTTGGCTCAGAAACTGCATTACAATCCCACACAAAAGCCAAGCACACAGCCGACAAGTGA | 951 | 44.16 | MEFWGAEVKVGEPLLVSPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLVFDKEFELSHNWKNGSVHFTGYTSLLPEEEESTYTDSEEDFPLAVTDNGKPEPEPKKDAKPDTSGTKKKVQIVEPNKVASNSNIDSKKNEDSSDEDDDEDEESTDDENENGGEEDDTDDDENESSGVDSEDSDEDSDDSLEEDEQTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVDTPHPSKKAGKMPAANDKTKQQTPKSANAAFPCKTCNRTFGSETALQSHTKAKHTADK | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31023435 | 31027614 | + | MELO3C009430.2.1 | Cme04g02439 | 326700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02439 | 316 | MobiDBLite | consensus disorder prediction | 99 | 289 | - | - | |
Cme04g02439 | 316 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 289 | 316 | IPR013087 | - | |
Cme04g02439 | 316 | MobiDBLite | consensus disorder prediction | 243 | 272 | - | - | |
Cme04g02439 | 316 | PANTHER | 32 KDA HEAT SHOCK PROTEIN-RELATED | 1 | 311 | - | - | |
Cme04g02439 | 316 | SMART | c2h2final6 | 289 | 312 | IPR013087 | - | |
Cme04g02439 | 316 | Pfam | C2H2-type zinc finger | 288 | 312 | - | - | |
Cme04g02439 | 316 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 291 | 312 | IPR013087 | - | |
Cme04g02439 | 316 | MobiDBLite | consensus disorder prediction | 212 | 236 | - | - | |
Cme04g02439 | 316 | MobiDBLite | consensus disorder prediction | 120 | 137 | - | - | |
Cme04g02439 | 316 | Gene3D | Classic Zinc Finger | 286 | 315 | - | - | |
Cme04g02439 | 316 | Pfam | Nucleoplasmin-like domain | 3 | 92 | IPR041232 | - | |
Cme04g02439 | 316 | MobiDBLite | consensus disorder prediction | 161 | 211 | - | - | |
Cme04g02439 | 316 | PANTHER | HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 | 1 | 311 | - | - | |
Cme04g02439 | 316 | MobiDBLite | consensus disorder prediction | 274 | 289 | - | - | |
Cme04g02439 | 316 | Gene3D | Nucleoplasmin core domain | 1 | 96 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02439 | Cme-Chr4:31023435 | Cme11g01880 | Cme-Chr11:26987015 | 4.22E-59 | dispersed | |
Cme11g01879 | Cme-Chr11:26982576 | Cme04g02439 | Cme-Chr4:31023435 | 8.25E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41272 | PF17800 | NPL | 1.40E-13 | CL0055 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02439 | - | - | csv:101207572 | 474.552 |