Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02439 ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGTCCCGGAGAGGAGAAGATACTGCATCTGTCGCAGGCCTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTCCTATATGTCAAGGTTGGCAATCAAAAACTTGTTCTTGGGACACTATCCTCGGAGAAATTCCCACAAGTGTCTTTTGACCTGGTGTTTGACAAAGAATTTGAGCTATCTCATAATTGGAAAAATGGAAGCGTGCACTTTACAGGATATACATCTCTCCTTCCAGAAGAGGAGGAATCTACTTATACTGATTCTGAAGAGGATTTTCCTCTAGCTGTCACTGACAATGGAAAGCCAGAGCCAGAGCCTAAGAAAGATGCAAAGCCTGATACTTCCGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGTTGCCTCTAATTCAAATATTGACAGTAAGAAGAATGAAGACAGTTCTGATGAAGATGATGACGAGGATGAGGAGAGCACAGATGATGAGAATGAAAATGGAGGTGAAGAAGATGATACCGATGATGACGAAAATGAGTCTTCTGGAGTCGATAGCGAAGACTCTGATGAGGACTCGGATGACAGTTTGGAAGAGGACGAGCAGACACCTAAAAAGGCTGAAGCAAGCAAGAAGAGGCCTTTAGATTCTGCTAATAAAACGCCTGCTCCTGATAAGAAGGCAAAACTCGTCACTCCTCAGAAGACTGATGGCAAGAAAGGCGTTGCTCATGTAGATACTCCTCATCCTTCAAAGAAGGCCGGGAAAATGCCTGCTGCTAATGACAAAACTAAACAGCAGACTCCCAAATCAGCAAATGCCGCATTCCCTTGCAAAACTTGCAACAGGACATTTGGCTCAGAAACTGCATTACAATCCCACACAAAAGCCAAGCACACAGCCGACAAGTGA 951 44.16 MEFWGAEVKVGEPLLVSPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLVFDKEFELSHNWKNGSVHFTGYTSLLPEEEESTYTDSEEDFPLAVTDNGKPEPEPKKDAKPDTSGTKKKVQIVEPNKVASNSNIDSKKNEDSSDEDDDEDEESTDDENENGGEEDDTDDDENESSGVDSEDSDEDSDDSLEEDEQTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVDTPHPSKKAGKMPAANDKTKQQTPKSANAAFPCKTCNRTFGSETALQSHTKAKHTADK 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31023435 31027614 + MELO3C009430.2.1 Cme04g02439 326700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02439 316 MobiDBLite consensus disorder prediction 99 289 - -
Cme04g02439 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 316 IPR013087 -
Cme04g02439 316 MobiDBLite consensus disorder prediction 243 272 - -
Cme04g02439 316 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 311 - -
Cme04g02439 316 SMART c2h2final6 289 312 IPR013087 -
Cme04g02439 316 Pfam C2H2-type zinc finger 288 312 - -
Cme04g02439 316 ProSitePatterns Zinc finger C2H2 type domain signature. 291 312 IPR013087 -
Cme04g02439 316 MobiDBLite consensus disorder prediction 212 236 - -
Cme04g02439 316 MobiDBLite consensus disorder prediction 120 137 - -
Cme04g02439 316 Gene3D Classic Zinc Finger 286 315 - -
Cme04g02439 316 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Cme04g02439 316 MobiDBLite consensus disorder prediction 161 211 - -
Cme04g02439 316 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 311 - -
Cme04g02439 316 MobiDBLite consensus disorder prediction 274 289 - -
Cme04g02439 316 Gene3D Nucleoplasmin core domain 1 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02439 Cme-Chr4:31023435 Cme11g01880 Cme-Chr11:26987015 4.22E-59 dispersed
Cme11g01879 Cme-Chr11:26982576 Cme04g02439 Cme-Chr4:31023435 8.25E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41272 PF17800 NPL 1.40E-13 CL0055 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02439 - - csv:101207572 474.552