Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02445 | CTCTGTGGGGATTGGCAGATCAAACAGATTCTGTTTCTCTGTCTCTTTCTTCTTCAACCTTCTTCTTCTTCATCACAGAGTGAGAGAGACAAATCAACAGTATATTCCTTTGCTTTTTTCTCCATTTGGGTTCCTCAAACAGAGACACCCTTATTTCTTAATCTTATTTCTCAACCATTTCAGGCCCCCAATTCATCAAAGATGATGATGGTGGAGAAGGAGGAGAAGGTGGGGATGAACATTTTTCGTTCAGCAATAGTTTTCTTTTTCTCTCTTACCCTTTTAGTTTCTCCTTCTTTCTCTTTAGATGATGATTCTTCTGCTCTAACTCGTTTTCGTCTTCAAGCTGATTCCCATGGGGGTTTACTAAGAAATTGGACTGGTTCTGATCCTTGTGCTTCTTCATGGCGTGGAGTTCAGTGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAATTTACGAGGCCCCATTGACTCTCTAGCGCCGCTTGATCAGCTTCGCCTTCTTGACCTCCATGACAACCGTTTGAATGGAACCATTTCGCCGCTTGTTAACTGTACGAATCTTAAGCTGTTGTATCTTTCCGGTAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCACTCAGGCGACTTCTCCGACTGGACTTGTCGGATAACAATATCCGCGGTGGAATTCCTGAGGATATTTCTAAATTGTCTCGACTCCTCACGTTACGTTTGCAGAACAATGTCCTCTCCGGTACGGTGCCGGATCTCTCTGTTTCGCTTGTGAATCTCACTGAACTTAATTTAACCAACAATGAACTGTCCGGGCGGTTGCCGGATGGGATGATGAAGAAATTCGGTGAGAAGAGTTTCACAGGAAACGAAGGGGTTTGTGGGTCGAGTCCATTACCGATCTGTTCAGTTACTGGTTCGCCGCCGGCGTCGGATCCTACTAGAACGGTACCGTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTAGTCCGAACAGTAAAGAATCTCGAAAAGGGCTGAGCCCTGGCGTGATTGTCGCGATTGTGATCGCGAATTGCGTTGCATTACTTGTGATTATCTCGTTCATCGTAGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCAAGCTCCATGACCGGAAGCGAAAGCGGAAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAAGTATACGCTAATGGCGGTGGTGACAGTGATGGCACTAACGCTACAGACAGAAGCAAGCTAGTGTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCATCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGAACAGTTTACCGGGCAGTTCTTGACGACGGTTGTACGGTGGCTGTGAAGAGGTTGAAAGATGCAAACCCATGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATCGGAAAGCTGAAACATCCCAACATTGTGAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCAAACGGGAGTTTACATTCTCTTCTACATGGAAACCGAGGCCCAGGGAGAATTCCGTTGGATTGGACGACAAGGATTAGTTTAGTTCTTGGAGCTGCTCGTGGTTTAGCAAGAATCCATGGTGAATACAGTGCTTCAAAGATCCCTCATGGGAACGTCAAATCTTCCAATGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTCTACTTCTCAACCCTGTCCATGCCATTGCAAGGTTAGGGGGCTACAAGGCCCCAGAGCAAGAGGAGACAAAACGTCTATCTCAAAAAGCAGACGTTTACAGCTTCGGTGTTTTATTGCTTGAAGTCTTAACGGGTCGTGCACCATCTCTCTACCCATCGCCTTCAAACCCGCGAAGCGACGACGAAGAGCAACCGGTGGACCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTTGATCCAGAGCTATTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCTATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCAGAAGTGGCAAAGATGATCGAAGATATTAGGGTCGAGCAGTCCCCGCTTGGAGAAGATTACGACGAATCACGTAATTCACTTTCGCCATCCTTAGCCACCACAGAAGATGGTATGTAA | 2253 | 46.29 | LCGDWQIKQILFLCLFLLQPSSSSSQSERDKSTVYSFAFFSIWVPQTETPLFLNLISQPFQAPNSSKMMMVEKEEKVGMNIFRSAIVFFFSLTLLVSPSFSLDDDSSALTRFRLQADSHGGLLRNWTGSDPCASSWRGVQCSVNGRVVALSLPSMNLRGPIDSLAPLDQLRLLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTELNLTNNELSGRLPDGMMKKFGEKSFTGNEGVCGSSPLPICSVTGSPPASDPTRTVPSNPSSLPQNPIISPNSKESRKGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQEETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGM | 750 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31056209 | 31058827 | + | MELO3C009424.2.1 | Cme04g02445 | 326706 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02445 | 750 | MobiDBLite | consensus disorder prediction | 380 | 395 | - | - | |
| Cme04g02445 | 750 | SUPERFAMILY | Protein kinase-like (PK-like) | 445 | 718 | IPR011009 | - | |
| Cme04g02445 | 750 | Pfam | Leucine Rich Repeat | 192 | 214 | IPR001611 | GO:0005515 | |
| Cme04g02445 | 750 | Gene3D | Phosphorylase Kinase; domain 1 | 414 | 516 | - | - | |
| Cme04g02445 | 750 | SUPERFAMILY | L domain-like | 104 | 283 | - | - | |
| Cme04g02445 | 750 | MobiDBLite | consensus disorder prediction | 380 | 415 | - | - | |
| Cme04g02445 | 750 | Gene3D | Ribonuclease Inhibitor | 187 | 308 | IPR032675 | - | |
| Cme04g02445 | 750 | Pfam | Protein kinase domain | 445 | 716 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cme04g02445 | 750 | ProSiteProfiles | Protein kinase domain profile. | 441 | 723 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cme04g02445 | 750 | PANTHER | LRR RECEPTOR-LIKE KINASE | 92 | 741 | - | - | |
| Cme04g02445 | 750 | Gene3D | Transferase(Phosphotransferase) domain 1 | 517 | 739 | - | - | |
| Cme04g02445 | 750 | MobiDBLite | consensus disorder prediction | 732 | 750 | - | - | |
| Cme04g02445 | 750 | MobiDBLite | consensus disorder prediction | 725 | 750 | - | - | |
| Cme04g02445 | 750 | MobiDBLite | consensus disorder prediction | 309 | 343 | - | - | |
| Cme04g02445 | 750 | Pfam | Leucine rich repeat N-terminal domain | 103 | 142 | IPR013210 | - | |
| Cme04g02445 | 750 | CDD | STKc_IRAK | 447 | 721 | - | - | |
| Cme04g02445 | 750 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 92 | 741 | - | - | |
| Cme04g02445 | 750 | MobiDBLite | consensus disorder prediction | 309 | 344 | - | - | |
| Cme04g02445 | 750 | Gene3D | Ribonuclease Inhibitor | 100 | 186 | IPR032675 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02445 | Cme-Chr4:31056209 | Cme10g00239 | Cme-Chr10:1574589 | 8.58E-174 | dispersed | |
| Cme07g01173 | Cme-Chr7:15759262 | Cme04g02445 | Cme-Chr4:31056209 | 3.74E-109 | dispersed | |
| Cme11g00706 | Cme-Chr11:8397833 | Cme04g02445 | Cme-Chr4:31056209 | 8.45E-82 | dispersed | |
| Cme04g02445 | Cme-Chr4:31056209 | Cme05g01954 | Cme-Chr5:28090976 | 2.15E-150 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 64844 | PF00069 | Pkinase | 2.80E-33 | CL0016 | Cme | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02445 | - | - | csv:101206843 | 1236.86 |