Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02446 ATGGCTTCCTGTGACGACGACTTCTCTCTCCTCAACGACGATCACCACCACCAACACCACCACCAATCCACTACCAACCACCACCATGTACCAACGCCTCACCACATCCATCAATCCTACGCATCTCACCGCTTCACGCCTCGATCGTCTTCCGTTCACGCGCCGCCTCAGCCGTCTCCCAATCAACCGGCTCAACCGATTCTTGCACCGTCCGGAAGTCCGAAGAAGATCGGTGGCCCGATAGACGAGGAAGAGGAGGAAGAGGATGCGGAGGATTATGGTGATCCTGCTTTCTGCTCCAGTTCGTTTGATAATGGAGATCCAAATCGGCTTGGTGTTGGTGTTGATGTGCGGGTTGAGAAGAGGAAGGATCAGTCGGACGAGCTTACGGAGGAAGGAGGTTCTTATAGTAGTTATAAAAGAGCAAAACCTTCCTCCAGCGGCGGCGAATACAGGAAGGATCGAGAGGAGTGGAGTGATGCGGCTATTTCCTGCCTTCTGGATGCGTATACCGAGAAATTCACGCAACTGAATAGGGGGAATTTGAGGGGGAGGGATTGGGAGGAAGTGGCTGCAACTGTCAGTGAACGGTGCGAGAAGCAGAGCAAGAGCGTAGAGCAGTGTAAGAATAAGGTGGACAACTTAAAGAAGAGATATAAGTTAGAGAGACATAGGATGAGTAACGGTGGCGTCTCGATCAGTCACTGGCCTTGGTTTAAGCAAATGGAGCAAATTGTTGGAAATTCTTTGACAATGAAGGTTGTTTCTGATGAGGATCGGAGTGTTGCTTCCTCAGGGAATACTCCGAGGATATCAAAGAGGTACGTTCTTCCCGCACCCAATACTGCTGGTCAAATGAATAACGTAAAACCCAAAGCAGTTACCAGTCCAAGGTGGCGAAGAGTCGTCTTTAAAATCAGTGGTACGGCTCTTGCAGGGACTGGTCCTAACAACATCGATTCAAAGGTTGCAATGGCAATTGCCAGAGAAGTTGTAATGGCTTGTCGCCTGGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTCTGTGGAGACTCTTGGGTGACTACAACAGGTTTAGATAGATGTACAGCATACCAAATTGGTATGATGGCTACTGTGATGAATTCAATACTTCTTCAGTCAGCAATAGAGAAGATGGGAGTTCAGACTCGTGTCCAATCTGCATTTATGCTTCAGGAGGTTGCTGAACCATACAGTAGGCAACGTGCTATAAGGCATCTTGAGAAAGGCAGAGTAGTTATATTTGGTGGCATTGGTGCTGGCACTGGAAATCCCCTATTTTCGACTGATACAGCTGCTGCTCTTCGAGCTTCTGAGATTCATGCCGAGGCAGTTCTTAAGGGTACAAACGTTGATGGCGTGTATGACTGCAATTCACAAGACAACAATTTTACGTTCAAGCACATATCTTTTAGGGAGTTGGTATCAAGAGGGGCCACTAGCATGGACATGACCGCATTAACTTTCTGTGAAGAGAACAACCTTCCTGTTGTCGTCTTTAATCTTCTTGAGCCTGGAAATATCTCAAAAGCATTATGTGGAGAGCAAGTGGGCACACTGATTGATCAAAATGGAAGAATTAGCTAG 1617 47.62 MASCDDDFSLLNDDHHHQHHHQSTTNHHHVPTPHHIHQSYASHRFTPRSSSVHAPPQPSPNQPAQPILAPSGSPKKIGGPIDEEEEEEDAEDYGDPAFCSSSFDNGDPNRLGVGVDVRVEKRKDQSDELTEEGGSYSSYKRAKPSSSGGEYRKDREEWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNGGVSISHWPWFKQMEQIVGNSLTMKVVSDEDRSVASSGNTPRISKRYVLPAPNTAGQMNNVKPKAVTSPRWRRVVFKISGTALAGTGPNNIDSKVAMAIAREVVMACRLGVEVAIVVGGRNFFCGDSWVTTTGLDRCTAYQIGMMATVMNSILLQSAIEKMGVQTRVQSAFMLQEVAEPYSRQRAIRHLEKGRVVIFGGIGAGTGNPLFSTDTAAALRASEIHAEAVLKGTNVDGVYDCNSQDNNFTFKHISFRELVSRGATSMDMTALTFCEENNLPVVVFNLLEPGNISKALCGEQVGTLIDQNGRIS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31060540 31065529 - MELO3C009423.2.1 Cme04g02446 326707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02446 538 MobiDBLite consensus disorder prediction 53 67 - -
Cme04g02446 538 PANTHER URIDYLATE KINASE 1 538 - -
Cme04g02446 538 Coils Coil 198 225 - -
Cme04g02446 538 Hamap Uridylate kinase [pyrH]. 297 532 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cme04g02446 538 MobiDBLite consensus disorder prediction 16 154 - -
Cme04g02446 538 Gene3D - 290 537 IPR036393 -
Cme04g02446 538 MobiDBLite consensus disorder prediction 114 130 - -
Cme04g02446 538 CDD AAK_UMPK-PyrH-Ec 300 532 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cme04g02446 538 Gene3D - 158 221 - -
Cme04g02446 538 SUPERFAMILY Carbamate kinase-like 297 531 IPR036393 -
Cme04g02446 538 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 538 IPR011817 GO:0006221|GO:0009041
Cme04g02446 538 Pfam Myb/SANT-like DNA-binding domain 155 245 IPR044822 -
Cme04g02446 538 Pfam Amino acid kinase family 301 511 IPR001048 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00318 Cme-Chr1:2393682 Cme04g02446 Cme-Chr4:31060540 1.72E-15 dispersed
Cme04g02446 Cme-Chr4:31060540 Cme08g01074 Cme-Chr8:7052972 1.75E-95 dispersed
Cme04g02446 Cme-Chr4:31060540 Cme12g01289 Cme-Chr12:20942204 9.05E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41273 PF00696 AA_kinase 9.90E-25 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02446 - - csv:101222460 1030.78