Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02447 ATGGAAACCAATAGTTTAGGCGGCGGCGGTGTGGGTGGGAGTGGTGGAGGAGGAGGAGGAGGAGGAGCTGGAGCAGCTGGAGGAGGAGGGATGTTTTCGGGCATGAATTCGTCAATGTTGGGATTGGAACTACCACTTCATCAAAACCCAACAAATCCCACTAATCCTCACCAATTACATCACCCTCCAATGGTATCTTATGTCCAACATGACCCCCATCACCACCAACAACCGCCGTCGGTCTCCGTGAAATACCCCTTCCCGACAAAAGCTAAGCCACAGCAGTCAAATCTCAGTGACGACGAGGAGCAGGGGTTCGCGGCGGATGACAGTAATGGAGATGGCAAGAAGAAAATCTCGCCGTGGCAGAGGATGAAATGGACGGATATGATGGTTCGGCTGTTGATTACAGCGGTGTTCTATATCGGCGATGAAGGTGGGTCGGAGCCGGTGGACCACGTCGGGAAGAAAAAACCAGTAGGGTTACTGCAAAAGAAGGGGAAATGGAAATCGGTATCCAGAGCAATGATGGAAAAGGGATTCTACGTTTCACCACAGCAATGTGAAGACAAATTTAACGATTTAAACAAAAGATACAAACGAGTTAACGATATTTTAGGGAAGGGAACAGCCTGCAAAGTAGTAGAGAATCAAACATTACTTGATTCAATGGAATTAACACCGAAAACAAAAGAGGAAGTACGAAAATTACTCAATTCTAAACATCTTTTCTTCAGAGAAATGTGCGCTTACCACAACACTTGCCGCCACAGCACCACCCACCCCTCGCCGGACGCGGCAACAGAACCATCCCACCTTCCACAACAACAACAGCAACAGCAACTATGCTTCCACGCCACAGATACCACAACCTCCGCCAGTGTAGCAGCTGGCGAGTGTTCGAAAAGCGGAGATGAGGAGGATGAGGAGGAGGAAGAGGACGAATCGGAAGAGGAGGAAGAGGATGAGGAAACTGAAGGAAGACAGGAAGAAGAGGAGGAAACGGAATCGAGGAAGAGGGCGAGGAAAGGGGGGATAACGGCTGGGATGCAGCAGTTGAGTGCGGAGGTGATGGGAGTTATTTCGGACGGGGGGAGGAGTCCATGGGAGAAGAAGCAATGGATGAAGAGCCGATTGATTCAGCTTGAAGAGCAGAAAGTGAGCTGGCAAACGCAGGCATTCGAGCTGGAGAAACAGAGGCTGAAATGGGTGAAGTTCAGGAGCAAGAAGGAGAGGGATATGGAGAGAGCGAAGCTGGAGAATGAGAAGAGAATGCTGGAAAACGAGAGGATGATGCTGATTGTAAAGAAGAACGAGTTGGATTTGATGGGTATGCAACATTATCAGCAACAGCAGCAGCATTCCTCGAACAAGCGAGGGGATCCATCGTCGATTACAGGATGA 1404 49.5 METNSLGGGGVGGSGGGGGGGGAGAAGGGGMFSGMNSSMLGLELPLHQNPTNPTNPHQLHHPPMVSYVQHDPHHHQQPPSVSVKYPFPTKAKPQQSNLSDDEEQGFAADDSNGDGKKKISPWQRMKWTDMMVRLLITAVFYIGDEGGSEPVDHVGKKKPVGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQTLLDSMELTPKTKEEVRKLLNSKHLFFREMCAYHNTCRHSTTHPSPDAATEPSHLPQQQQQQQLCFHATDTTTSASVAAGECSKSGDEEDEEEEEDESEEEEEDEETEGRQEEEEETESRKRARKGGITAGMQQLSAEVMGVISDGGRSPWEKKQWMKSRLIQLEEQKVSWQTQAFELEKQRLKWVKFRSKKERDMERAKLENEKRMLENERMMLIVKKNELDLMGMQHYQQQQQHSSNKRGDPSSITG 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31066914 31068491 - MELO3C009422.2.1 Cme04g02447 326708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02447 467 Coils Coil 379 399 - -
Cme04g02447 467 MobiDBLite consensus disorder prediction 42 118 - -
Cme04g02447 467 MobiDBLite consensus disorder prediction 42 59 - -
Cme04g02447 467 Pfam Myb/SANT-like DNA-binding domain 124 250 IPR044822 -
Cme04g02447 467 MobiDBLite consensus disorder prediction 257 282 - -
Cme04g02447 467 Coils Coil 409 436 - -
Cme04g02447 467 MobiDBLite consensus disorder prediction 294 347 - -
Cme04g02447 467 MobiDBLite consensus disorder prediction 303 331 - -
Cme04g02447 467 Gene3D - 127 201 - -
Cme04g02447 467 MobiDBLite consensus disorder prediction 1 22 - -
Cme04g02447 467 PANTHER F16F4.11 PROTEIN-RELATED 30 464 - -
Cme04g02447 467 MobiDBLite consensus disorder prediction 445 467 - -
Cme04g02447 467 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 30 464 - -
Cme04g02447 467 Coils Coil 302 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02447 - - - csv:101222223 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02447 Cme-Chr4:31066914 Cme05g00151 Cme-Chr5:1025203 2.42E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1065 . . . . Bpe04g01554 . . . Cmo06g00430 Cmo14g00250 . . . . . . Cpe08g01055 . . . . . . . . . . . . . . . . . . . . . Cme04g02447 . Blo09g00522 Bda03g01692 . . . . . Sed04g1433 . . Cma06g00433 Cma14g00260 Car06g00372 Car14g00237 Cpe03g00225 . Bhi11g01998 Tan08g1791 Cmetu04g0446 Lac10g2930 Hepe05g0327 . . Cla10g01855 Cam10g1911 Cec10g1966 Cco10g1938 Clacu10g1927 Cmu10g2671 Cre10g2060 Lsi03g01951 Csa03g03362 Chy04g01980 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009757 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41274 PF13837 Myb_DNA-bind_4 3.00E-21 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02447 Cme_Chr04 FPKM 11.698551 15.351752 13.246945 9.948233 22.279587 28.226427 24.201029 9.381505 10.789759 9.41879