Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02448 | ATGGGGGCCTCGCTTTCGAACATGGGTGAAGCTGTTAATGGCTCCACCATCGGTCCTGGCCTCGGGGACATACCAGAGAACTGTGTGGCACGTGTTTTTCTTCACCTTACTCCGCCGGAGATTTGCAACCTTGCGCGGCTTAACAGAGCGTTTCGCGGCGCCGCCTCGTCGGATGCTGTTTGGGAAACGAAATTGCCTTCAAATTATCAAGATCTTTTGGATTTCTTGCCTCCCGAACGGTATCAAAATCTGTCAAAAAAGGACATATACGCGCTGCTATCTCGCCCTGTGCCATTCGATGATGGAAATAAGGAGGTGTGGCTGGACAGAATTACTGGAAGGATTTGCATGTCGATATCAGCGAAGGGCATGGCTATAACTGGAATTGATGATAGAAGATACTGGAATTGGATTCCTACTGAAGAATCTCGGTTCAATGTTGTGGCATATCTGCAGCAAATTTGGTGGTTTGAAGTAGATGGGATGGTGAAATTTCCTTTTCCTGCTGATATCTATACACTAACCTTCAGGCTTCACCTTGGGAGGTTCTACAAGCGGCTAGGCCGACGTGTATGCAGCTTCGAGCATACTCATGGTTGGGATGTAAAGCCTGTACGGTTCGAAATGTCTACTTCTGATGGACAGCAAGCAACACACGAATTCTGTTTAGACGAGCATGGATTTATTGATGTAAGTGGACACCGCAAGCGGGGGTCATGGATAGAATACAAGGTAGGTGAGTTTTTGGTCAACAAGTCAGGATCAACCACGGAAATTAGATTTTCCATGAAACAGATCGACTGTACGCATTCTAAAGGCGGACTTTGTGTAGATTCTGTATTTATCATTCCCAGCATCTTGAAAGAGCGTAAAAGATGA | 879 | 46.19 | MGASLSNMGEAVNGSTIGPGLGDIPENCVARVFLHLTPPEICNLARLNRAFRGAASSDAVWETKLPSNYQDLLDFLPPERYQNLSKKDIYALLSRPVPFDDGNKEVWLDRITGRICMSISAKGMAITGIDDRRYWNWIPTEESRFNVVAYLQQIWWFEVDGMVKFPFPADIYTLTFRLHLGRFYKRLGRRVCSFEHTHGWDVKPVRFEMSTSDGQQATHEFCLDEHGFIDVSGHRKRGSWIEYKVGEFLVNKSGSTTEIRFSMKQIDCTHSKGGLCVDSVFIIPSILKERKR | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31069217 | 31075255 | + | MELO3C009421.2.1 | Cme04g02448 | 326709 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02448 | 292 | PANTHER | F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED | 1 | 291 | - | - | |
| Cme04g02448 | 292 | SMART | fbox_2 | 24 | 64 | IPR001810 | GO:0005515 | |
| Cme04g02448 | 292 | SUPERFAMILY | F-box domain | 8 | 91 | IPR036047 | GO:0005515 | |
| Cme04g02448 | 292 | PANTHER | F-BOX PROTEIN PP2-A15 | 1 | 291 | - | - | |
| Cme04g02448 | 292 | ProSiteProfiles | F-box domain profile. | 18 | 64 | IPR001810 | GO:0005515 | |
| Cme04g02448 | 292 | Pfam | Phloem protein 2 | 115 | 284 | IPR025886 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02448 | Cme-Chr4:31069217 | Cme06g02700 | Cme-Chr6:34222095 | 2.31E-102 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02448 | - | - | csv:101206359 | 609.372 |